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Items: 1 to 20 of 96


An analytical workflow for accurate variant discovery in highly divergent regions.

Tian S, Yan H, Neuhauser C, Slager SL.

BMC Genomics. 2016 Sep 2;17:703. doi: 10.1186/s12864-016-3045-z.


De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies.

Karamitros T, Harrison I, Piorkowska R, Katzourakis A, Magiorkinis G, Mbisa JL.

PLoS One. 2016 Jun 16;11(6):e0157600. doi: 10.1371/journal.pone.0157600.


Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction.

Jung H, Yoon BH, Kim WJ, Kim DW, Hurwood DA, Lyons RE, Salin KR, Kim HS, Baek I, Chand V, Mather PB.

Int J Mol Sci. 2016 May 7;17(5). pii: E690. doi: 10.3390/ijms17050690.


Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage.

Zukurov JP, do Nascimento-Brito S, Volpini AC, Oliveira GC, Janini LM, Antoneli F.

Algorithms Mol Biol. 2016 Mar 11;11:2. doi: 10.1186/s13015-016-0064-x.


Parallel Analysis of 124 Universal SNPs for Human Identification by Targeted Semiconductor Sequencing.

Zhang S, Bian Y, Zhang Z, Zheng H, Wang Z, Zha L, Cai J, Gao Y, Ji C, Hou Y, Li C.

Sci Rep. 2015 Dec 22;5:18683. doi: 10.1038/srep18683.


Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision Medicine.

Ye H, Meehan J, Tong W, Hong H.

Pharmaceutics. 2015 Nov 23;7(4):523-41. doi: 10.3390/pharmaceutics7040523. Review.


Advanced Applications of RNA Sequencing and Challenges.

Han Y, Gao S, Muegge K, Zhang W, Zhou B.

Bioinform Biol Insights. 2015 Nov 15;9(Suppl 1):29-46. doi: 10.4137/BBI.S28991. Review.


misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads.

Zhu X, Leung HC, Wang R, Chin FY, Yiu SM, Quan G, Li Y, Zhang R, Jiang Q, Liu B, Dong Y, Zhou G, Wang Y.

BMC Bioinformatics. 2015 Nov 16;16:386. doi: 10.1186/s12859-015-0818-3.


iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data.

Quek C, Jung CH, Bellingham SA, Lonie A, Hill AF.

J Extracell Vesicles. 2015 Nov 9;4:29454. doi: 10.3402/jev.v4.29454.


Next-generation sequencing in clinical virology: Discovery of new viruses.

Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V.

World J Virol. 2015 Aug 12;4(3):265-76. doi: 10.5501/wjv.v4.i3.265. Review.


A pipeline for completing bacterial genomes using in silico and wet lab approaches.

Puranik R, Quan G, Werner J, Zhou R, Xu Z.

BMC Genomics. 2015;16 Suppl 3:S7. doi: 10.1186/1471-2164-16-S3-S7.


Computational characterisation of cancer molecular profiles derived using next generation sequencing.

Oleksiewicz U, Tomczak K, Woropaj J, Markowska M, Stępniak P, Shah PK.

Contemp Oncol (Pozn). 2015;19(1A):A78-91. doi: 10.5114/wo.2014.47137. Review.


DIME: a novel framework for de novo metagenomic sequence assembly.

Guo X, Yu N, Ding X, Wang J, Pan Y.

J Comput Biol. 2015 Feb;22(2):159-77. doi: 10.1089/cmb.2014.0251.


De novo assembly of bacterial transcriptomes from RNA-seq data.

Tjaden B.

Genome Biol. 2015 Jan 13;16:1. doi: 10.1186/s13059-014-0572-2.


A field guide to whole-genome sequencing, assembly and annotation.

Ekblom R, Wolf JB.

Evol Appl. 2014 Nov;7(9):1026-42. doi: 10.1111/eva.12178. Review.


A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.

Bratcher HB, Corton C, Jolley KA, Parkhill J, Maiden MC.

BMC Genomics. 2014 Dec 18;15:1138. doi: 10.1186/1471-2164-15-1138.


Chromatin accessibility: a window into the genome.

Tsompana M, Buck MJ.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. Review.


PERGA: a paired-end read guided de novo assembler for extending contigs using SVM and look ahead approach.

Zhu X, Leung HC, Chin FY, Yiu SM, Quan G, Liu B, Wang Y.

PLoS One. 2014 Dec 2;9(12):e114253. doi: 10.1371/journal.pone.0114253.


MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.

Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT.

PLoS One. 2014 Nov 3;9(11):e110915. doi: 10.1371/journal.pone.0110915.


Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.

Baes CF, Dolezal MA, Koltes JE, Bapst B, Fritz-Waters E, Jansen S, Flury C, Signer-Hasler H, Stricker C, Fernando R, Fries R, Moll J, Garrick DJ, Reecy JM, Gredler B.

BMC Genomics. 2014 Nov 1;15:948. doi: 10.1186/1471-2164-15-948.

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