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Kinetics of DNA uptake during transformation provide evidence for a translocation ratchet mechanism.

Hepp C, Maier B.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12467-12472.


An AT-barrier mechanically controls DNA reannealing under tension.

Bongini L, Pongor C, Falorsi G, Pertici I, Kellermayer M, Lombardi V, Bianco P.

Nucleic Acids Res. 2016 Sep 19;44(16):7954-62. doi: 10.1093/nar/gkw604.


Unravelling the structural plasticity of stretched DNA under torsional constraint.

King GA, Peterman EJ, Wuite GJ.

Nat Commun. 2016 Jun 6;7:11810. doi: 10.1038/ncomms11810.


Mechanisms of small molecule-DNA interactions probed by single-molecule force spectroscopy.

Almaqwashi AA, Paramanathan T, Rouzina I, Williams MC.

Nucleic Acids Res. 2016 May 19;44(9):3971-88. doi: 10.1093/nar/gkw237.


Visualizing recombination intermediates with single-stranded DNA curtains.

Qi Z, Greene EC.

Methods. 2016 Aug 1;105:62-74. doi: 10.1016/j.ymeth.2016.03.027. Review.


Force regulated dynamics of RPA on a DNA fork.

Kemmerich FE, Daldrop P, Pinto C, Levikova M, Cejka P, Seidel R.

Nucleic Acids Res. 2016 Jul 8;44(12):5837-48. doi: 10.1093/nar/gkw187.


Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.

Alemany A, Rey-Serra B, Frutos S, Cecconi C, Ritort F.

Biophys J. 2016 Jan 5;110(1):63-74. doi: 10.1016/j.bpj.2015.11.015.


Directly interrogating single quantum dot labelled UvrA2 molecules on DNA tightropes using an optically trapped nanoprobe.

Simons M, Pollard MR, Hughes CD, Ward AD, Van Houten B, Towrie M, Botchway SW, Parker AW, Kad NM.

Sci Rep. 2015 Dec 22;5:18486. doi: 10.1038/srep18486.


Chromothripsis and Kataegis Induced by Telomere Crisis.

Maciejowski J, Li Y, Bosco N, Campbell PJ, de Lange T.

Cell. 2015 Dec 17;163(7):1641-54. doi: 10.1016/j.cell.2015.11.054.


A Single-Strand Annealing Protein Clamps DNA to Detect and Secure Homology.

Ander M, Subramaniam S, Fahmy K, Stewart AF, Schäffer E.

PLoS Biol. 2015 Aug 13;13(8):e1002213. doi: 10.1371/journal.pbio.1002213.


The impact of DNA intercalators on DNA and DNA-processing enzymes elucidated through force-dependent binding kinetics.

Biebricher AS, Heller I, Roijmans RF, Hoekstra TP, Peterman EJ, Wuite GJ.

Nat Commun. 2015 Jun 18;6:7304. doi: 10.1038/ncomms8304.


Disturbance-free rapid solution exchange for magnetic tweezers single-molecule studies.

Le S, Yao M, Chen J, Efremov AK, Azimi S, Yan J.

Nucleic Acids Res. 2015 Sep 30;43(17):e113. doi: 10.1093/nar/gkv554.


Single-molecule kinetics and footprinting of DNA bis-intercalation: the paradigmatic case of Thiocoraline.

Camunas-Soler J, Manosas M, Frutos S, Tulla-Puche J, Albericio F, Ritort F.

Nucleic Acids Res. 2015 Mar 11;43(5):2767-79. doi: 10.1093/nar/gkv087.


Equilibrium and kinetics of DNA overstretching modeled with a quartic energy landscape.

Argudo D, Purohit PK.

Biophys J. 2014 Nov 4;107(9):2151-63. doi: 10.1016/j.bpj.2014.09.014.


Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Lipfert J, Skinner GM, Keegstra JM, Hensgens T, Jager T, Dulin D, Köber M, Yu Z, Donkers SP, Chou FC, Das R, Dekker NH.

Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15408-13. doi: 10.1073/pnas.1407197111.


Combining single-molecule manipulation and imaging for the study of protein-DNA interactions.

Monico C, Belcastro G, Vanzi F, Pavone FS, Capitanio M.

J Vis Exp. 2014 Aug 27;(90). doi: 10.3791/51446.


The transition mechanism of DNA overstretching: a microscopic view using molecular dynamics.

Bongini L, Lombardi V, Bianco P.

J R Soc Interface. 2014 Aug 6;11(97):20140399. doi: 10.1098/rsif.2014.0399.


Single aromatic residue location alters nucleic acid binding and chaperone function of FIV nucleocapsid protein.

Wu H, Wang W, Naiyer N, Fichtenbaum E, Qualley DF, McCauley MJ, Gorelick RJ, Rouzina I, Musier-Forsyth K, Williams MC.

Virus Res. 2014 Nov 26;193:39-51. doi: 10.1016/j.virusres.2014.06.002.


Force-induced melting of DNA--evidence for peeling and internal melting from force spectra on short synthetic duplex sequences.

Bosaeus N, El-Sagheer AH, Brown T, Åkerman B, Nordén B.

Nucleic Acids Res. 2014 Jul;42(12):8083-91. doi: 10.1093/nar/gku441.

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