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Whole-Genome Relationships among Francisella Bacteria of Diverse Origins Define New Species and Provide Specific Regions for Detection.

Challacombe JF, Petersen JM, Gallegos-Graves V, Hodge D, Pillai S, Kuske CR.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02589-16. doi: 10.1128/AEM.02589-16. Print 2017 Feb 1. Erratum in: Appl Environ Microbiol. 2017 Mar 2;83(6):.


Rapid Identification and Characterization of Francisella by Molecular Biology and Other Techniques.

Lai XH, Zhao LF, Chen XM, Ren Y.

Open Microbiol J. 2016 Apr 14;10:64-77. doi: 10.2174/1874285801610010064. eCollection 2016.


MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.

Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT.

PLoS One. 2014 Nov 3;9(11):e110915. doi: 10.1371/journal.pone.0110915. eCollection 2014.


TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations.

Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS.

PLoS One. 2014 Sep 19;9(9):e107964. doi: 10.1371/journal.pone.0107964. eCollection 2014.


Population analysis of Streptococcus suis isolates from slaughtered swine by use of minimum core genome sequence typing.

Zheng H, Ji S, Lan R, Liu Z, Bai X, Zhang W, Gottschalk M, Xu J.

J Clin Microbiol. 2014 Oct;52(10):3568-72. doi: 10.1128/JCM.00536-14. Epub 2014 Jul 23.


Francisella tularensis subsp. tularensis group A.I, United States.

Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, Petersen JM, Keim P, Wagner DM.

Emerg Infect Dis. 2014 May;20(5):861-5. doi: 10.3201/eid2005.131559.


Role of pathogenicity determinant protein C (PdpC) in determining the virulence of the Francisella tularensis subspecies tularensis SCHU.

Uda A, Sekizuka T, Tanabayashi K, Fujita O, Kuroda M, Hotta A, Sugiura N, Sharma N, Morikawa S, Yamada A.

PLoS One. 2014 Feb 18;9(2):e89075. doi: 10.1371/journal.pone.0089075. eCollection 2014.


Virulence difference between the prototypic Schu S4 strain (A1a) and Francisella tularensis A1a, A1b, A2 and type B strains in a murine model of infection.

Molins CR, Delorey MJ, Yockey BM, Young JW, Belisle JT, Schriefer ME, Petersen JM.

BMC Infect Dis. 2014 Feb 6;14:67. doi: 10.1186/1471-2334-14-67.


Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.

Cole C, Krampis K, Karagiannis K, Almeida JS, Faison WJ, Motwani M, Wan Q, Golikov A, Pan Y, Simonyan V, Mazumder R.

BMC Bioinformatics. 2014 Jan 27;15:28. doi: 10.1186/1471-2105-15-28.


Adaptive mutations and replacements of virulence traits in the Escherichia coli O104:H4 outbreak population.

Guy L, Jernberg C, Arvén Norling J, Ivarsson S, Hedenström I, Melefors Ö, Liljedahl U, Engstrand L, Andersson SG.

PLoS One. 2013 May 10;8(5):e63027. doi: 10.1371/journal.pone.0063027. Print 2013.


German Francisella tularensis isolates from European brown hares (Lepus europaeus) reveal genetic and phenotypic diversity.

Müller W, Hotzel H, Otto P, Karger A, Bettin B, Bocklisch H, Braune S, Eskens U, Hörmansdorfer S, Konrad R, Nesseler A, Peters M, Runge M, Schmoock G, Schwarz BA, Sting R, Myrtennäs K, Karlsson E, Forsman M, Tomaso H.

BMC Microbiol. 2013 Mar 21;13:61. doi: 10.1186/1471-2180-13-61.


Rapid focused sequencing: a multiplexed assay for simultaneous detection and strain typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis.

Turingan RS, Thomann HU, Zolotova A, Tan E, Selden RF.

PLoS One. 2013;8(2):e56093. doi: 10.1371/journal.pone.0056093. Epub 2013 Feb 13.


Use of temperature for standardizing the progression of Francisella tularensis in mice.

Molins CR, Delorey MJ, Young JW, Yockey BM, Belisle JT, Schriefer ME, Petersen JM.

PLoS One. 2012;7(9):e45310. doi: 10.1371/journal.pone.0045310. Epub 2012 Sep 24.


Genomic comparison between a virulent type A1 strain of Francisella tularensis and its attenuated O-antigen mutant.

Modise T, Ryder C, Mane SP, Bandara AB, Jensen RV, Inzana TJ.

J Bacteriol. 2012 May;194(10):2775-6. doi: 10.1128/JB.00152-12.


Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models.

Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, Keim PS.

PLoS One. 2012;7(3):e32866. doi: 10.1371/journal.pone.0032866. Epub 2012 Mar 16.


Recombination and population structure in Salmonella enterica.

Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly P.

PLoS Genet. 2011 Jul;7(7):e1002191. doi: 10.1371/journal.pgen.1002191. Epub 2011 Jul 28.


Differential chitinase activity and production within Francisella species, subspecies, and subpopulations.

Chandler JC, Molins CR, Petersen JM, Belisle JT.

J Bacteriol. 2011 Jul;193(13):3265-75. doi: 10.1128/JB.00093-11. Epub 2011 Apr 29.


Monitoring the long-term molecular epidemiology of the pneumococcus and detection of potential 'vaccine escape' strains.

Pandya GA, McEllistrem MC, Venepally P, Holmes MH, Jarrahi B, Sanka R, Liu J, Karamycheva SA, Bai Y, Fleischmann RD, Peterson SN.

PLoS One. 2011 Jan 10;6(1):e15950. doi: 10.1371/journal.pone.0015950.


Genomic tracing of epidemics and disease outbreaks.

Schürch AC, Siezen RJ.

Microb Biotechnol. 2010 Nov;3(6):628-33. doi: 10.1111/j.1751-7915.2010.00224.x. No abstract available.


BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Jolley KA, Maiden MC.

BMC Bioinformatics. 2010 Dec 10;11:595. doi: 10.1186/1471-2105-11-595.

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