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Items: 1 to 20 of 110

1.

Novel methods to optimize gene and statistic test for evaluation - an application for Escherichia coli.

Tuan-Anh T, Ly LT, Viet NQ, Bao PT.

BMC Bioinformatics. 2017 Feb 10;18(1):100. doi: 10.1186/s12859-017-1517-z.

2.

Tissue Specific Expression Levels of Apoptosis Involved Genes Have Correlations with Codon and Amino Acid Usage.

Hajjari M, Sadeghi I, Salavaty A, Nasiri H, Birgani MT.

Genomics Inform. 2016 Dec;14(4):234-240. doi: 10.5808/GI.2016.14.4.234. Epub 2016 Dec 31.

3.

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency.

Burkhardt DH, Rouskin S, Zhang Y, Li GW, Weissman JS, Gross CA.

Elife. 2017 Jan 31;6. pii: e22037. doi: 10.7554/eLife.22037.

4.
5.

Comparison of aldehyde-producing activities of cyanobacterial acyl-(acyl carrier protein) reductases.

Kudo H, Nawa R, Hayashi Y, Arai M.

Biotechnol Biofuels. 2016 Nov 1;9:234. eCollection 2016 Nov 1.

6.

Triple Isotope Effects Support Concerted Hydride and Proton Transfer and Promoting Vibrations in Human Heart Lactate Dehydrogenase.

Wang Z, Chang EP, Schramm VL.

J Am Chem Soc. 2016 Nov 16;138(45):15004-15010. Epub 2016 Nov 4.

7.

Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution.

Zur H, Tuller T.

Nucleic Acids Res. 2016 Nov 2;44(19):9031-9049. Epub 2016 Sep 2.

8.

Side effects of extra tRNA supplied in a typical bacterial protein production scenario.

Søgaard KM, Nørholm MH.

Protein Sci. 2016 Nov;25(11):2102-2108. doi: 10.1002/pro.3011. Epub 2016 Oct 15.

PMID:
27515297
9.

Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast.

Gamble CE, Brule CE, Dean KM, Fields S, Grayhack EJ.

Cell. 2016 Jul 28;166(3):679-90. doi: 10.1016/j.cell.2016.05.070. Epub 2016 Jun 30.

PMID:
27374328
10.

Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.

Jacobson GN, Clark PL.

Curr Opin Struct Biol. 2016 Jun;38:102-10. doi: 10.1016/j.sbi.2016.06.002. Epub 2016 Jun 16. Review.

PMID:
27318814
11.

Putative virulence factors of Corynebacterium pseudotuberculosis FRC41: vaccine potential and protein expression.

Santana-Jorge KT, Santos TM, Tartaglia NR, Aguiar EL, Souza RF, Mariutti RB, Eberle RJ, Arni RK, Portela RW, Meyer R, Azevedo V.

Microb Cell Fact. 2016 May 16;15:83. doi: 10.1186/s12934-016-0479-6.

12.

Rationally reduced libraries for combinatorial pathway optimization minimizing experimental effort.

Jeschek M, Gerngross D, Panke S.

Nat Commun. 2016 Mar 31;7:11163. doi: 10.1038/ncomms11163.

13.

The Selective Advantage of Synonymous Codon Usage Bias in Salmonella.

Brandis G, Hughes D.

PLoS Genet. 2016 Mar 10;12(3):e1005926. doi: 10.1371/journal.pgen.1005926. eCollection 2016 Mar 10.

14.

A model for competition for ribosomes in the cell.

Raveh A, Margaliot M, Sontag ED, Tuller T.

J R Soc Interface. 2016 Mar;13(116). pii: 20151062. doi: 10.1098/rsif.2015.1062.

15.

Improving Protein Expression Prediction Using Extra Features and Ensemble Averaging.

Fernandes A, Vinga S.

PLoS One. 2016 Mar 2;11(3):e0150369. doi: 10.1371/journal.pone.0150369. eCollection 2016 Mar 2.

16.

Compensating the Fitness Costs of Synonymous Mutations.

Knöppel A, Näsvall J, Andersson DI.

Mol Biol Evol. 2016 Jun;33(6):1461-77. doi: 10.1093/molbev/msw028. Epub 2016 Feb 16.

17.

Biochemical characterization of two haloalkane dehalogenases: DccA from Caulobacter crescentus and DsaA from Saccharomonospora azurea.

Carlucci L, Zhou E, Malashkevich VN, Almo SC, Mundorff EC.

Protein Sci. 2016 Apr;25(4):877-86. doi: 10.1002/pro.2895. Epub 2016 Feb 21.

PMID:
26833751
18.
19.

A Cyan Fluorescent Reporter Expressed from the Chloroplast Genome of Marchantia polymorpha.

Boehm CR, Ueda M, Nishimura Y, Shikanai T, Haseloff J.

Plant Cell Physiol. 2016 Feb;57(2):291-9. doi: 10.1093/pcp/pcv160. Epub 2015 Dec 3.

20.

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data.

Gritsenko AA, Hulsman M, Reinders MJ, de Ridder D.

PLoS Comput Biol. 2015 Aug 14;11(8):e1004336. doi: 10.1371/journal.pcbi.1004336. eCollection 2015 Aug 14.

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