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Items: 18

1.

Urea-Dependent Adenylate Kinase Activation following Redistribution of Structural States.

Rogne P, Wolf-Watz M.

Biophys J. 2016 Oct 4;111(7):1385-1395. doi: 10.1016/j.bpj.2016.08.028.

PMID:
27705762
2.

5-Carboxy-8-hydroxyquinoline is a Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor which Causes Iron Translocation.

Hopkinson RJ, Tumber A, Yapp C, Chowdhury R, Aik W, Che KH, Li XS, Kristensen JB, King ON, Chan MC, Yeoh KK, Choi H, Walport LJ, Thinnes CC, Bush JT, Lejeune C, Rydzik AM, Rose NR, Bagg EA, McDonough MA, Krojer T, Yue WW, Ng SS, Olsen L, Brennan PE, Oppermann U, Muller-Knapp S, Klose RJ, Ratcliffe PJ, Schofield CJ, Kawamura A.

Chem Sci. 2013 Aug 1;4(8):3110-3117.

3.

The AlkB Family of Fe(II)/α-Ketoglutarate-dependent Dioxygenases: Repairing Nucleic Acid Alkylation Damage and Beyond.

Fedeles BI, Singh V, Delaney JC, Li D, Essigmann JM.

J Biol Chem. 2015 Aug 21;290(34):20734-42. doi: 10.1074/jbc.R115.656462. Review.

4.

Protein dynamics control the progression and efficiency of the catalytic reaction cycle of the Escherichia coli DNA-repair enzyme AlkB.

Ergel B, Gill ML, Brown L, Yu B, Palmer AG 3rd, Hunt JF.

J Biol Chem. 2014 Oct 24;289(43):29584-601. doi: 10.1074/jbc.M114.575647.

5.

Nucleic acid oxidation in DNA damage repair and epigenetics.

Zheng G, Fu Y, He C.

Chem Rev. 2014 Apr 23;114(8):4602-20. doi: 10.1021/cr400432d. Review. No abstract available.

6.

Structure of human RNA N⁶-methyladenine demethylase ALKBH5 provides insights into its mechanisms of nucleic acid recognition and demethylation.

Aik W, Scotti JS, Choi H, Gong L, Demetriades M, Schofield CJ, McDonough MA.

Nucleic Acids Res. 2014 Apr;42(7):4741-54. doi: 10.1093/nar/gku085.

7.

Quantum mechanics/molecular mechanics study on the oxygen binding and substrate hydroxylation step in AlkB repair enzymes.

Quesne MG, Latifi R, Gonzalez-Ovalle LE, Kumar D, de Visser SP.

Chemistry. 2014 Jan 7;20(2):435-46. doi: 10.1002/chem.201303282.

8.

Spectroscopic studies of the mononuclear non-heme Fe(II) enzyme FIH: second-sphere contributions to reactivity.

Light KM, Hangasky JA, Knapp MJ, Solomon EI.

J Am Chem Soc. 2013 Jul 3;135(26):9665-74. doi: 10.1021/ja312571m.

9.

Structural investigations of the nickel-induced inhibition of truncated constructs of the JMJD2 family of histone demethylases using X-ray absorption spectroscopy.

Giri NC, Passantino L, Sun H, Zoroddu MA, Costa M, Maroney MJ.

Biochemistry. 2013 Jun 18;52(24):4168-83. doi: 10.1021/bi400274v.

10.

Imposing function down a (cupin)-barrel: secondary structure and metal stereochemistry in the αKG-dependent oxygenases.

Hangasky JA, Taabazuing CY, Valliere MA, Knapp MJ.

Metallomics. 2013 Apr;5(4):287-301. doi: 10.1039/c3mt20153h. Review.

11.

DNA repair by reversal of DNA damage.

Yi C, He C.

Cold Spring Harb Perspect Biol. 2013 Jan 1;5(1):a012575. doi: 10.1101/cshperspect.a012575. Review. Erratum in: Cold Spring Harb Perspect Biol. 2014 Apr;6(4):a023440.

12.

AlkB dioxygenase preferentially repairs protonated substrates: specificity against exocyclic adducts and molecular mechanism of action.

Maciejewska AM, Poznanski J, Kaczmarska Z, Krowisz B, Nieminuszczy J, Polkowska-Nowakowska A, Grzesiuk E, Kusmierek JT.

J Biol Chem. 2013 Jan 4;288(1):432-41. doi: 10.1074/jbc.M112.353342.

13.

Duplex interrogation by a direct DNA repair protein in search of base damage.

Yi C, Chen B, Qi B, Zhang W, Jia G, Zhang L, Li CJ, Dinner AR, Yang CG, He C.

Nat Struct Mol Biol. 2012 Jun 3;19(7):671-6. doi: 10.1038/nsmb.2320.

14.

Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.

Pastore C, Topalidou I, Forouhar F, Yan AC, Levy M, Hunt JF.

J Biol Chem. 2012 Jan 13;287(3):2130-43. doi: 10.1074/jbc.M111.286187.

15.

Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones.

Korvald H, Mølstad Moe AM, Cederkvist FH, Thiede B, Laerdahl JK, Bjørås M, Alseth I.

PLoS One. 2011;6(9):e25188. doi: 10.1371/journal.pone.0025188.

16.

Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.

Rechkoblit O, Delaney JC, Essigmann JM, Patel DJ.

Structure. 2011 Jun 8;19(6):821-32. doi: 10.1016/j.str.2011.03.020.

17.

X-ray absorption spectroscopy structural investigation of early intermediates in the mechanism of DNA repair by human ABH2.

Giri NC, Sun H, Chen H, Costa M, Maroney MJ.

Biochemistry. 2011 Jun 7;50(22):5067-76. doi: 10.1021/bi101668x.

18.

Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase.

Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C.

Nature. 2010 Nov 11;468(7321):330-3. doi: 10.1038/nature09497.

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