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Items: 1 to 20 of 37

1.

Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice.

Parker CC, Gopalakrishnan S, Carbonetto P, Gonzales NM, Leung E, Park YJ, Aryee E, Davis J, Blizard DA, Ackert-Bicknell CL, Lionikas A, Pritchard JK, Palmer AA.

Nat Genet. 2016 Aug;48(8):919-26. doi: 10.1038/ng.3609. Epub 2016 Jul 4.

2.

OpaR controls a network of downstream transcription factors in Vibrio parahaemolyticus BB22OP.

Kernell Burke A, Guthrie LT, Modise T, Cormier G, Jensen RV, McCarter LL, Stevens AM.

PLoS One. 2015 Apr 22;10(4):e0121863. doi: 10.1371/journal.pone.0121863. eCollection 2015.

3.

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue.

Tyakht AV, Ilina EN, Alexeev DG, Ischenko DS, Gorbachev AY, Semashko TA, Larin AK, Selezneva OV, Kostryukova ES, Karalkin PA, Vakhrushev IV, Kurbatov LK, Archakov AI, Govorun VM.

BMC Genomics. 2014 Dec 15;15:1108. doi: 10.1186/1471-2164-15-1108.

4.

RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain.

Farris SP, Mayfield RD.

Int Rev Neurobiol. 2014;116:275-300. doi: 10.1016/B978-0-12-801105-8.00011-4. Review.

5.

Influence of RNA extraction methods and library selection schemes on RNA-seq data.

Sultan M, Amstislavskiy V, Risch T, Schuette M, Dökel S, Ralser M, Balzereit D, Lehrach H, Yaspo ML.

BMC Genomics. 2014 Aug 11;15:675. doi: 10.1186/1471-2164-15-675.

6.

Transcriptome-based analysis of the Pantoea stewartii quorum-sensing regulon and identification of EsaR direct targets.

Ramachandran R, Burke AK, Cormier G, Jensen RV, Stevens AM.

Appl Environ Microbiol. 2014 Sep;80(18):5790-800. doi: 10.1128/AEM.01489-14. Epub 2014 Jul 11.

7.

Navigating the rapids: the development of regulated next-generation sequencing-based clinical trial assays and companion diagnostics.

Pant S, Weiner R, Marton MJ.

Front Oncol. 2014 Apr 17;4:78. doi: 10.3389/fonc.2014.00078. eCollection 2014. Review.

8.

A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums.

Shakoor N, Nair R, Crasta O, Morris G, Feltus A, Kresovich S.

BMC Plant Biol. 2014 Jan 23;14:35. doi: 10.1186/1471-2229-14-35.

9.

De Novo transcriptome sequencing reveals important molecular networks and metabolic pathways of the plant, Chlorophytum borivilianum.

Kalra S, Puniya BL, Kulshreshtha D, Kumar S, Kaur J, Ramachandran S, Singh K.

PLoS One. 2013 Dec 23;8(12):e83336. doi: 10.1371/journal.pone.0083336. eCollection 2013.

10.

RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells.

Macrae T, Sargeant T, Lemieux S, Hébert J, Deneault E, Sauvageau G.

PLoS One. 2013 Sep 17;8(9):e72884. doi: 10.1371/journal.pone.0072884. eCollection 2013.

11.

Proteomic approaches and identification of novel therapeutic targets for alcoholism.

Gorini G, Harris RA, Mayfield RD.

Neuropsychopharmacology. 2014 Jan;39(1):104-30. doi: 10.1038/npp.2013.182. Epub 2013 Jul 31. Review.

12.

Translation regulation gets its 'omics' moment.

Kuersten S, Radek A, Vogel C, Penalva LO.

Wiley Interdiscip Rev RNA. 2013 Nov-Dec;4(6):617-30. doi: 10.1002/wrna.1173. Epub 2013 May 15. Review.

13.

Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR).

Solomon O, Oren S, Safran M, Deshet-Unger N, Akiva P, Jacob-Hirsch J, Cesarkas K, Kabesa R, Amariglio N, Unger R, Rechavi G, Eyal E.

RNA. 2013 May;19(5):591-604. doi: 10.1261/rna.038042.112. Epub 2013 Mar 8.

14.

De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen.

Thakur K, Chawla V, Bhatti S, Swarnkar MK, Kaur J, Shankar R, Jha G.

PLoS One. 2013;8(1):e53937. doi: 10.1371/journal.pone.0053937. Epub 2013 Jan 17.

15.

RNA-seq and microarray complement each other in transcriptome profiling.

Kogenaru S, Qing Y, Guo Y, Wang N.

BMC Genomics. 2012 Nov 15;13:629. doi: 10.1186/1471-2164-13-629.

16.

Big (sequencing) future of non-coding RNA research for the understanding of cocaine.

Wu DY.

Front Genet. 2012 Sep 3;3:158. doi: 10.3389/fgene.2012.00158. eCollection 2012. No abstract available.

17.

De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae).

Zhang XM, Zhao L, Larson-Rabin Z, Li DZ, Guo ZH.

PLoS One. 2012;7(8):e42082. doi: 10.1371/journal.pone.0042082. Epub 2012 Aug 14.

18.

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments.

Gahlan P, Singh HR, Shankar R, Sharma N, Kumari A, Chawla V, Ahuja PS, Kumar S.

BMC Genomics. 2012 Mar 31;13:126. doi: 10.1186/1471-2164-13-126.

19.

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach.

Mundry M, Bornberg-Bauer E, Sammeth M, Feulner PG.

PLoS One. 2012;7(2):e31410. doi: 10.1371/journal.pone.0031410. Epub 2012 Feb 27.

20.

R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data.

Mittal VK, McDonald JF.

Nucleic Acids Res. 2012 May;40(9):e67. doi: 10.1093/nar/gks047. Epub 2012 Jan 28.

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