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Items: 1 to 20 of 41

1.

Multiple Pairwise Analysis of Non-homologous Centromere Coupling Reveals Preferential Chromosome Size-Dependent Interactions and a Role for Bouquet Formation in Establishing the Interaction Pattern.

Lefrançois P, Rockmill B, Xie P, Roeder GS, Snyder M.

PLoS Genet. 2016 Oct 21;12(10):e1006347. doi: 10.1371/journal.pgen.1006347. eCollection 2016 Oct.

2.

The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae.

Gartenberg MR, Smith JS.

Genetics. 2016 Aug;203(4):1563-99. doi: 10.1534/genetics.112.145243.

PMID:
27516616
3.

Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.

Smith EM, Lajoie BR, Jain G, Dekker J.

Am J Hum Genet. 2016 Jan 7;98(1):185-201. doi: 10.1016/j.ajhg.2015.12.002.

4.

The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer.

Belton JM, Lajoie BR, Audibert S, Cantaloube S, Lassadi I, Goiffon I, Baù D, Marti-Renom MA, Bystricky K, Dekker J.

Cell Rep. 2015 Dec 1;13(9):1855-67. doi: 10.1016/j.celrep.2015.10.063. Epub 2015 Nov 19.

5.

An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Fraser J, Williamson I, Bickmore WA, Dostie J.

Microbiol Mol Biol Rev. 2015 Sep;79(3):347-72. doi: 10.1128/MMBR.00006-15. Review.

6.

The yeast genome undergoes significant topological reorganization in quiescence.

Rutledge MT, Russo M, Belton JM, Dekker J, Broach JR.

Nucleic Acids Res. 2015 Sep 30;43(17):8299-313. doi: 10.1093/nar/gkv723. Epub 2015 Jul 21.

7.
8.

Differential chromosome conformations as hallmarks of cellular identity revealed by mathematical polymer modeling.

Lassadi I, Kamgoué A, Goiffon I, Tanguy-le-Gac N, Bystricky K.

PLoS Comput Biol. 2015 Jun 1;11(6):e1004306. doi: 10.1371/journal.pcbi.1004306. eCollection 2015 Jun.

9.

Inferential modeling of 3D chromatin structure.

Wang S, Xu J, Zeng J.

Nucleic Acids Res. 2015 Apr 30;43(8):e54. doi: 10.1093/nar/gkv100. Epub 2015 Feb 17.

10.

Heterochromatin formation via recruitment of DNA repair proteins.

Kirkland JG, Peterson MR, Still CD 2nd, Brueggeman L, Dhillon N, Kamakaka RT.

Mol Biol Cell. 2015 Apr 1;26(7):1395-410. doi: 10.1091/mbc.E14-09-1413. Epub 2015 Jan 28.

11.

Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances.

Robin JD, Ludlow AT, Batten K, Magdinier F, Stadler G, Wagner KR, Shay JW, Wright WE.

Genes Dev. 2014 Nov 15;28(22):2464-76. doi: 10.1101/gad.251041.114.

12.

Transcriptional regulation at the yeast nuclear envelope.

Steglich B, Sazer S, Ekwall K.

Nucleus. 2013 Sep-Oct;4(5):379-89. doi: 10.4161/nucl.26394. Epub 2013 Sep 6. Review.

13.

Single cell visualization of yeast gene expression shows correlation of epigenetic switching between multiple heterochromatic regions through multiple generations.

Mano Y, Kobayashi TJ, Nakayama J, Uchida H, Oki M.

PLoS Biol. 2013 Jul;11(7):e1001601. doi: 10.1371/journal.pbio.1001601. Epub 2013 Jul 2.

14.

Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins.

Kirkland JG, Kamakaka RT.

J Cell Biol. 2013 Jun 10;201(6):809-26. doi: 10.1083/jcb.201211105. Epub 2013 Jun 3.

15.

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Dekker J, Marti-Renom MA, Mirny LA.

Nat Rev Genet. 2013 Jun;14(6):390-403. doi: 10.1038/nrg3454. Epub 2013 May 9. Review.

16.

The hierarchy of the 3D genome.

Gibcus JH, Dekker J.

Mol Cell. 2013 Mar 7;49(5):773-82. doi: 10.1016/j.molcel.2013.02.011. Review.

17.

Structure and function in the budding yeast nucleus.

Taddei A, Gasser SM.

Genetics. 2012 Sep;192(1):107-29. doi: 10.1534/genetics.112.140608. Review.

18.

RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo.

Takeda Y, Jothi R, Birault V, Jetten AM.

Nucleic Acids Res. 2012 Sep 1;40(17):8519-35. Epub 2012 Jun 29.

19.

Sir3 and epigenetic inheritance of silent chromatin in Saccharomyces cerevisiae.

Motwani T, Poddar M, Holmes SG.

Mol Cell Biol. 2012 Jul;32(14):2784-93. doi: 10.1128/MCB.06399-11. Epub 2012 May 14.

20.

Mating-type genes and MAT switching in Saccharomyces cerevisiae.

Haber JE.

Genetics. 2012 May;191(1):33-64. doi: 10.1534/genetics.111.134577. Review.

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