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Items: 1 to 20 of 139

1.

Viral DNA Replication Orientation and hnRNPs Regulate Transcription of the Human Papillomavirus 18 Late Promoter.

Wang X, Liu H, Ge H, Ajiro M, Sharma NR, Meyers C, Morozov P, Tuschl T, Klar A, Court D, Zheng ZM.

MBio. 2017 May 30;8(3). pii: e00713-17. doi: 10.1128/mBio.00713-17.

2.

Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs.

Chen Z, Sun Y, Yang X, Wu Z, Guo K, Niu X, Wang Q, Ruan J, Bu W, Gao S.

PLoS One. 2017 Apr 25;12(4):e0176458. doi: 10.1371/journal.pone.0176458. eCollection 2017.

3.

RCAS: an RNA centric annotation system for transcriptome-wide regions of interest.

Uyar B, Yusuf D, Wurmus R, Rajewsky N, Ohler U, Akalin A.

Nucleic Acids Res. 2017 Jun 2;45(10):e91. doi: 10.1093/nar/gkx120.

4.

Shortcuts to a functional adipose tissue: The role of small non-coding RNAs.

Brandão BB, Guerra BA, Mori MA.

Redox Biol. 2017 Aug;12:82-102. doi: 10.1016/j.redox.2017.01.020. Epub 2017 Feb 7. Review.

5.

Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana.

Ma X, Han N, Shao C, Meng Y.

PLoS One. 2017 Jan 3;12(1):e0169212. doi: 10.1371/journal.pone.0169212. eCollection 2017.

6.

TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs.

Ustianenko D, Pasulka J, Feketova Z, Bednarik L, Zigackova D, Fortova A, Zavolan M, Vanacova S.

EMBO J. 2016 Oct 17;35(20):2179-2191. Epub 2016 Sep 19.

7.

Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation.

Stutika C, Mietzsch M, Gogol-Döring A, Weger S, Sohn M, Chen W, Heilbronn R.

PLoS One. 2016 Sep 9;11(9):e0161454. doi: 10.1371/journal.pone.0161454. eCollection 2016.

8.

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters.

Chen Y, Pai AA, Herudek J, Lubas M, Meola N, Järvelin AI, Andersson R, Pelechano V, Steinmetz LM, Jensen TH, Sandelin A.

Nat Genet. 2016 Sep;48(9):984-94. doi: 10.1038/ng.3616. Epub 2016 Jul 25.

9.

The non-coding RNA composition of the mitotic chromosome by 5'-tag sequencing.

Meng Y, Yi X, Li X, Hu C, Wang J, Bai L, Czajkowsky DM, Shao Z.

Nucleic Acids Res. 2016 Jun 2;44(10):4934-46. doi: 10.1093/nar/gkw195. Epub 2016 Mar 25.

10.

Small Non-coding Transfer RNA-Derived RNA Fragments (tRFs): Their Biogenesis, Function and Implication in Human Diseases.

Fu Y, Lee I, Lee YS, Bao X.

Genomics Inform. 2015 Dec;13(4):94-101. doi: 10.5808/GI.2015.13.4.94. Epub 2015 Dec 31. Review.

11.

Noncoding RNAs in breast cancer.

Lo PK, Wolfson B, Zhou X, Duru N, Gernapudi R, Zhou Q.

Brief Funct Genomics. 2016 May;15(3):200-21. doi: 10.1093/bfgp/elv055. Epub 2015 Dec 18.

12.

Diagnosing and Treating Nervous System Disorders by Targeting Novel Classes of Non-coding RNAs.

Qureshi IA, Mehler MF.

Int Drug Discov. 2011 Jun-Jul;6(3):30-36. No abstract available.

13.

RNA polymerase II pausing as a context-dependent reader of the genome.

Scheidegger A, Nechaev S.

Biochem Cell Biol. 2016 Feb;94(1):82-92. doi: 10.1139/bcb-2015-0045. Epub 2015 Sep 15. Review.

14.

Paradigm shifts in genomics through the FANTOM projects.

de Hoon M, Shin JW, Carninci P.

Mamm Genome. 2015 Oct;26(9-10):391-402. doi: 10.1007/s00335-015-9593-8. Epub 2015 Aug 8.

15.

Differential and coherent processing patterns from small RNAs.

Pundhir S, Gorodkin J.

Sci Rep. 2015 Jul 13;5:12062. doi: 10.1038/srep12062.

16.

Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets.

Fatima R, Akhade VS, Pal D, Rao SM.

Mol Cell Ther. 2015 Jun 12;3:5. doi: 10.1186/s40591-015-0042-6. eCollection 2015.

17.

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.

Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U.

Cell. 2015 May 7;161(4):774-89. doi: 10.1016/j.cell.2015.04.034.

18.

The role of piRNA and its potential clinical implications in cancer.

Assumpção CB, Calcagno DQ, Araújo TM, Santos SE, Santos ÂK, Riggins GJ, Burbano RR, Assumpção PP.

Epigenomics. 2015;7(6):975-84. doi: 10.2217/epi.15.37. Epub 2015 May 1. Review.

19.

Long Intergenic Non-Coding RNAs: Novel Drivers of Human Lymphocyte Differentiation.

Panzeri I, Rossetti G, Abrignani S, Pagani M.

Front Immunol. 2015 Apr 15;6:175. doi: 10.3389/fimmu.2015.00175. eCollection 2015. Review.

20.

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.

Mayer A, di Iulio J, Maleri S, Eser U, Vierstra J, Reynolds A, Sandstrom R, Stamatoyannopoulos JA, Churchman LS.

Cell. 2015 Apr 23;161(3):541-54. doi: 10.1016/j.cell.2015.03.010.

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