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Items: 1 to 20 of 38

1.

Prediction of post-translational modification sites using multiple kernel support vector machine.

Wang B, Wang M, Li A.

PeerJ. 2017 Apr 27;5:e3261. doi: 10.7717/peerj.3261. eCollection 2017.

2.

GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features.

Li F, Li C, Revote J, Zhang Y, Webb GI, Li J, Song J, Lithgow T.

Sci Rep. 2016 Oct 6;6:34595. doi: 10.1038/srep34595.

3.

A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions.

Saethang T, Payne DM, Avihingsanon Y, Pisitkun T.

BMC Bioinformatics. 2016 Aug 17;17(1):307. doi: 10.1186/s12859-016-1165-8.

4.

dbPAF: an integrative database of protein phosphorylation in animals and fungi.

Ullah S, Lin S, Xu Y, Deng W, Ma L, Zhang Y, Liu Z, Xue Y.

Sci Rep. 2016 Mar 24;6:23534. doi: 10.1038/srep23534.

5.

The current state of the art of quantitative phosphoproteomics and its applications to diabetes research.

Chan CY, Gritsenko MA, Smith RD, Qian WJ.

Expert Rev Proteomics. 2016;13(4):421-33. doi: 10.1586/14789450.2016.1164604. Review.

6.

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.

Huang KY, Su MG, Kao HJ, Hsieh YC, Jhong JH, Cheng KH, Huang HD, Lee TY.

Nucleic Acids Res. 2016 Jan 4;44(D1):D435-46. doi: 10.1093/nar/gkv1240. Epub 2015 Nov 17.

7.

Cell Pluripotency Levels Associated with Imprinted Genes in Human.

Yuan L, Tang X, Zhang B, Ding G.

Comput Math Methods Med. 2015;2015:471076. doi: 10.1155/2015/471076. Epub 2015 Oct 4.

8.

PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis.

Nickchi P, Jafari M, Kalantari S.

Database (Oxford). 2015 Apr 23;2015:bav037. doi: 10.1093/database/bav037. Print 2015.

9.

Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics.

Tsai CF, Wang YT, Yen HY, Tsou CC, Ku WC, Lin PY, Chen HY, Nesvizhskii AI, Ishihama Y, Chen YJ.

Nat Commun. 2015 Mar 27;6:6622. doi: 10.1038/ncomms7622.

10.

Regulation of translesion DNA synthesis: Posttranslational modification of lysine residues in key proteins.

McIntyre J, Woodgate R.

DNA Repair (Amst). 2015 May;29:166-79. doi: 10.1016/j.dnarep.2015.02.011. Epub 2015 Feb 18. Review.

11.

Systematic analysis of the in situ crosstalk of tyrosine modifications reveals no additional natural selection on multiply modified residues.

Pan Z, Liu Z, Cheng H, Wang Y, Gao T, Ullah S, Ren J, Xue Y.

Sci Rep. 2014 Dec 5;4:7331. doi: 10.1038/srep07331.

12.

Integrating phosphoproteomics in systems biology.

Liu Y, Chance MR.

Comput Struct Biotechnol J. 2014 Aug 1;10(17):90-7. doi: 10.1016/j.csbj.2014.07.003. eCollection 2014 Jul. Review.

13.

Human germline and pan-cancer variomes and their distinct functional profiles.

Pan Y, Karagiannis K, Zhang H, Dingerdissen H, Shamsaddini A, Wan Q, Simonyan V, Mazumder R.

Nucleic Acids Res. 2014 Oct;42(18):11570-88. doi: 10.1093/nar/gku772. Epub 2014 Sep 17.

14.

Physicochemical mechanisms of protein regulation by phosphorylation.

Nishi H, Shaytan A, Panchenko AR.

Front Genet. 2014 Aug 7;5:270. doi: 10.3389/fgene.2014.00270. eCollection 2014. Review.

15.

RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals.

Huang KY, Wu HY, Chen YJ, Lu CT, Su MG, Hsieh YC, Tsai CM, Lin KI, Huang HD, Lee TY, Chen YJ.

Database (Oxford). 2014 Apr 25;2014(0):bau034. doi: 10.1093/database/bau034. Print 2014.

16.

SysPTM 2.0: an updated systematic resource for post-translational modification.

Li J, Jia J, Li H, Yu J, Sun H, He Y, Lv D, Yang X, Glocker MO, Ma L, Yang J, Li L, Li W, Zhang G, Liu Q, Li Y, Xie L.

Database (Oxford). 2014 Apr 3;2014:bau025. doi: 10.1093/database/bau025. Print 2014.

17.
18.

CPLM: a database of protein lysine modifications.

Liu Z, Wang Y, Gao T, Pan Z, Cheng H, Yang Q, Cheng Z, Guo A, Ren J, Xue Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D531-6. doi: 10.1093/nar/gkt1093. Epub 2013 Nov 8.

19.

Hyperphosphorylation of polycystin-2 at a critical residue in disease reveals an essential role for polycystin-1-regulated dephosphorylation.

Streets AJ, Wessely O, Peters DJ, Ong AC.

Hum Mol Genet. 2013 May 15;22(10):1924-39. doi: 10.1093/hmg/ddt031. Epub 2013 Feb 5.

20.

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.

Lu CT, Huang KY, Su MG, Lee TY, BretaƱa NA, Chang WC, Chen YJ, Chen YJ, Huang HD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D295-305. doi: 10.1093/nar/gks1229. Epub 2012 Nov 27.

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