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Items: 1 to 20 of 39


Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices.

Brahmachari S, Gunn KH, Giuntoli RD, Mondragón A, Marko JF.

Phys Rev Lett. 2017 Nov 3;119(18):188103. doi: 10.1103/PhysRevLett.119.188103. Epub 2017 Oct 31.


Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe.

Benedetti F, Racko D, Dorier J, Burnier Y, Stasiak A.

Nucleic Acids Res. 2017 Sep 29;45(17):9850-9859. doi: 10.1093/nar/gkx716.


Torque and buckling in stretched intertwined double-helix DNAs.

Brahmachari S, Marko JF.

Phys Rev E. 2017 May;95(5-1):052401. doi: 10.1103/PhysRevE.95.052401. Epub 2017 May 1.


The dynamic interplay between DNA topoisomerases and DNA topology.

Seol Y, Neuman KC.

Biophys Rev. 2016 Nov;8(Suppl 1):101-111. doi: 10.1007/s12551-016-0240-8. Epub 2016 Nov 14. Review.


The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Seol Y, Neuman KC.

Biophys Rev. 2016 Sep;8(3):221-231. Epub 2016 Jul 2.


Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome.

El Sayyed H, Le Chat L, Lebailly E, Vickridge E, Pages C, Cornet F, Cosentino Lagomarsino M, Espéli O.

PLoS Genet. 2016 May 12;12(5):e1006025. doi: 10.1371/journal.pgen.1006025. eCollection 2016 May.


How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation.

Rawdon EJ, Dorier J, Racko D, Millett KC, Stasiak A.

Nucleic Acids Res. 2016 Jun 2;44(10):4528-38. doi: 10.1093/nar/gkw311. Epub 2016 Apr 22.


The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF.

Zawadzki P, Stracy M, Ginda K, Zawadzka K, Lesterlin C, Kapanidis AN, Sherratt DJ.

Cell Rep. 2015 Dec 22;13(11):2587-2596. doi: 10.1016/j.celrep.2015.11.034. Epub 2015 Dec 10.


Extending the range for force calibration in magnetic tweezers.

Daldrop P, Brutzer H, Huhle A, Kauert DJ, Seidel R.

Biophys J. 2015 May 19;108(10):2550-2561. doi: 10.1016/j.bpj.2015.04.011.


Direct Evidence for the Formation of Precatenanes during DNA Replication.

Cebrián J, Castán A, Martínez V, Kadomatsu-Hermosa MJ, Parra C, Fernández-Nestosa MJ, Schaerer C, Hernández P, Krimer DB, Schvartzman JB.

J Biol Chem. 2015 May 29;290(22):13725-35. doi: 10.1074/jbc.M115.642272. Epub 2015 Mar 31.


Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III.

Terekhova K, Marko JF, Mondragón A.

Nucleic Acids Res. 2014 Oct;42(18):11657-67. doi: 10.1093/nar/gku785. Epub 2014 Sep 17.


Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo.

Vos SM, Stewart NK, Oakley MG, Berger JM.

EMBO J. 2013 Nov 13;32(22):2950-62. doi: 10.1038/emboj.2013.218. Epub 2013 Oct 4.


Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method.

Paik DH, Roskens VA, Perkins TT.

Nucleic Acids Res. 2013 Oct;41(19):e179. doi: 10.1093/nar/gkt699. Epub 2013 Aug 9.


Distinct regions of the Escherichia coli ParC C-terminal domain are required for substrate discrimination by topoisomerase IV.

Vos SM, Lee I, Berger JM.

J Mol Biol. 2013 Sep 9;425(17):3029-45. doi: 10.1016/j.jmb.2013.04.033. Epub 2013 Jul 15.


The tail that wags the dog: topoisomerase IV ParC C-terminal domain controls strand passage activity through multipartite topology-dependent interactions with DNA.

Neuman KC.

J Mol Biol. 2013 Sep 9;425(17):3025-8. doi: 10.1016/j.jmb.2013.07.004. Epub 2013 Jul 11. No abstract available.


DNA self-assembly: from chirality to evolution.

Timsit Y.

Int J Mol Sci. 2013 Apr 15;14(4):8252-70. doi: 10.3390/ijms14048252. Review.


Chiral discrimination and writhe-dependent relaxation mechanism of human topoisomerase IIα.

Seol Y, Gentry AC, Osheroff N, Neuman KC.

J Biol Chem. 2013 May 10;288(19):13695-703. doi: 10.1074/jbc.M112.444745. Epub 2013 Mar 18.


Comparison of DNA decatenation by Escherichia coli topoisomerase IV and topoisomerase III: implications for non-equilibrium topology simplification.

Seol Y, Hardin AH, Strub MP, Charvin G, Neuman KC.

Nucleic Acids Res. 2013 Apr;41(8):4640-9. doi: 10.1093/nar/gkt136. Epub 2013 Mar 4.


The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV.

Hayama R, Bahng S, Karasu ME, Marians KJ.

J Biol Chem. 2013 Mar 15;288(11):7653-61. doi: 10.1074/jbc.M112.418087. Epub 2013 Jan 24.


Bullied no more: when and how DNA shoves proteins around.

Fogg JM, Randall GL, Pettitt BM, Sumners WL, Harris SA, Zechiedrich L.

Q Rev Biophys. 2012 Aug;45(3):257-299. doi: 10.1017/S0033583512000054. Epub 2012 Jul 31. Review.

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