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Items: 1 to 20 of 21

1.

Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.).

Jaiswal S, Iquebal MA, Arora V, Sheoran S, Sharma P, Angadi UB, Dahiya V, Singh R, Tiwari R, Singh GP, Rai A, Kumar D.

Sci Rep. 2019 Mar 7;9(1):3790. doi: 10.1038/s41598-019-40333-y.

2.

miRNAtools: Advanced Training Using the miRNA Web of Knowledge.

Stępień EŁ, Costa MC, Enguita FJ.

Noncoding RNA. 2018 Feb 16;4(1). pii: E5. doi: 10.3390/ncrna4010005.

3.

MicroRNAs in Cancer: challenges and opportunities in early detection, disease monitoring, and therapeutic agents.

Chatterjee N, Rana S, Espinosa-Diez C, Anand S.

Curr Pathobiol Rep. 2017 Mar;5(1):35-42. doi: 10.1007/s40139-017-0123-0. Epub 2017 Jan 19.

4.

Bioinformatic tools for microRNA dissection.

Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD.

Nucleic Acids Res. 2016 Jan 8;44(1):24-44. doi: 10.1093/nar/gkv1221. Epub 2015 Nov 17. Review.

5.

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential.

Cava C, Bertoli G, Castiglioni I.

BMC Syst Biol. 2015 Sep 21;9:62. doi: 10.1186/s12918-015-0211-x. Review.

6.

MicroRNAs: New Biomarkers for Diagnosis, Prognosis, Therapy Prediction and Therapeutic Tools for Breast Cancer.

Bertoli G, Cava C, Castiglioni I.

Theranostics. 2015 Jul 13;5(10):1122-43. doi: 10.7150/thno.11543. eCollection 2015. Review.

7.

Emerging applications of read profiles towards the functional annotation of the genome.

Pundhir S, Poirazi P, Gorodkin J.

Front Genet. 2015 May 19;6:188. doi: 10.3389/fgene.2015.00188. eCollection 2015. Review.

8.

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.

Karathanasis N, Tsamardinos I, Poirazi P.

PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151. eCollection 2015.

9.

microRNA-449a functions as a tumor-suppressor in gastric adenocarcinoma by targeting Bcl-2.

Wei B, Song Y, Zhang Y, Hu M.

Oncol Lett. 2013 Dec;6(6):1713-1718. Epub 2013 Oct 9.

10.

Integrated profiling of microRNA expression in membranous nephropathy using high-throughput sequencing technology.

Chen W, Lin X, Huang J, Tan K, Chen Y, Peng W, Li W, Dai Y.

Int J Mol Med. 2014 Jan;33(1):25-34. doi: 10.3892/ijmm.2013.1554. Epub 2013 Nov 12.

11.

Computational prediction of the localization of microRNAs within their pre-miRNA.

Leclercq M, Diallo AB, Blanchette M.

Nucleic Acids Res. 2013 Aug;41(15):7200-11. doi: 10.1093/nar/gkt466. Epub 2013 Jun 8.

12.

A Review of Computational Tools in microRNA Discovery.

Gomes CP, Cho JH, Hood L, Franco OL, Pereira RW, Wang K.

Front Genet. 2013 May 15;4:81. doi: 10.3389/fgene.2013.00081. eCollection 2013.

13.

Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation.

Williamson V, Kim A, Xie B, McMichael GO, Gao Y, Vladimirov V.

Brief Bioinform. 2013 Jan;14(1):36-45. doi: 10.1093/bib/bbs010. Epub 2012 Mar 24.

14.

Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters.

Uva P, Da Sacco L, Del Cornò M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A.

RNA. 2013 Mar;19(3):365-79. doi: 10.1261/rna.035394.112. Epub 2013 Jan 17.

15.

Prediction of conserved precursors of miRNAs and their mature forms by integrating position-specific structural features.

Terai G, Okida H, Asai K, Mituyama T.

PLoS One. 2012;7(9):e44314. doi: 10.1371/journal.pone.0044314. Epub 2012 Sep 5.

16.

A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.

Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P.

RNA Biol. 2012 Sep;9(9):1196-207. doi: 10.4161/rna.21725. Epub 2012 Sep 1.

17.

Experimental verification of a predicted intronic microRNA in human NGFR gene with a potential pro-apoptotic function.

Parsi S, Soltani BM, Hosseini E, Tousi SE, Mowla SJ.

PLoS One. 2012;7(4):e35561. doi: 10.1371/journal.pone.0035561. Epub 2012 Apr 27.

18.

Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation.

Meng F, Hackenberg M, Li Z, Yan J, Chen T.

PLoS One. 2012;7(3):e34394. doi: 10.1371/journal.pone.0034394. Epub 2012 Mar 28.

19.

Integrated sequence-structure motifs suffice to identify microRNA precursors.

Liu X, He S, Skogerbø G, Gong F, Chen R.

PLoS One. 2012;7(3):e32797. doi: 10.1371/journal.pone.0032797. Epub 2012 Mar 15.

20.

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.

Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.

PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843.

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