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Items: 18


MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.

Kuwahara H, Alazmi M, Cui X, Gao X.

Nucleic Acids Res. 2016 Jul 8;44(W1):W217-25. doi: 10.1093/nar/gkw342. Epub 2016 Apr 29.


Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

He F, Murabito E, Westerhoff HV.

J R Soc Interface. 2016 Apr;13(117). pii: 20151046. doi: 10.1098/rsif.2015.1046. Epub 2016 Apr 13. Review.


A highly selective biosynthetic pathway to non-natural C50 carotenoids assembled from moderately selective enzymes.

Furubayashi M, Ikezumi M, Takaichi S, Maoka T, Hemmi H, Ogawa T, Saito K, Tobias AV, Umeno D.

Nat Commun. 2015 Jul 14;6:7534. doi: 10.1038/ncomms8534.


Design and application of a novel high-throughput screening technique for 1-deoxynojirimycin.

Jiang P, Mu S, Li H, Li Y, Feng C, Jin JM, Tang SY.

Sci Rep. 2015 Feb 24;5:8563. doi: 10.1038/srep08563.


Biophysically inspired rational design of structured chimeric substrates for DNAzyme cascade engineering.

Lakin MR, Brown CW 3rd, Horwitz EK, Fanning ML, West HE, Stefanovic D, Graves SW.

PLoS One. 2014 Oct 27;9(10):e110986. doi: 10.1371/journal.pone.0110986. eCollection 2014.


Signal propagation in multi-layer DNAzyme cascades using structured chimeric substrates.

Brown CW 3rd, Lakin MR, Horwitz EK, Fanning ML, West HE, Stefanovic D, Graves SW.

Angew Chem Int Ed Engl. 2014 Jul 7;53(28):7183-7. doi: 10.1002/anie.201402691. Epub 2014 Jun 2.


Combining chemoinformatics with bioinformatics: in silico prediction of bacterial flavor-forming pathways by a chemical systems biology approach "reverse pathway engineering".

Liu M, Bienfait B, Sacher O, Gasteiger J, Siezen RJ, Nauta A, Geurts JM.

PLoS One. 2014 Jan 8;9(1):e84769. doi: 10.1371/journal.pone.0084769. eCollection 2014.


Rewiring yeast sugar transporter preference through modifying a conserved protein motif.

Young EM, Tong A, Bui H, Spofford C, Alper HS.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):131-6. doi: 10.1073/pnas.1311970111. Epub 2013 Dec 16.


Challenges and opportunities in synthetic biology for chemical engineers.

Luo Y, Lee JK, Zhao H.

Chem Eng Sci. 2013 Nov 15;103. doi: 10.1016/j.ces.2012.06.013.


Emerging tools for synthetic genome design.

Lee BR, Cho S, Song Y, Kim SC, Cho BK.

Mol Cells. 2013 May;35(5):359-70. doi: 10.1007/s10059-013-0127-5. Epub 2013 May 2. Review.


Type IV pilin proteins: versatile molecular modules.

Giltner CL, Nguyen Y, Burrows LL.

Microbiol Mol Biol Rev. 2012 Dec;76(4):740-72. doi: 10.1128/MMBR.00035-12. Review.


Engineering microbial chemical factories to produce renewable "biomonomers".

Adkins J, Pugh S, McKenna R, Nielsen DR.

Front Microbiol. 2012 Aug 30;3:313. doi: 10.3389/fmicb.2012.00313. eCollection 2012.


BglBrick vectors and datasheets: A synthetic biology platform for gene expression.

Lee TS, Krupa RA, Zhang F, Hajimorad M, Holtz WJ, Prasad N, Lee SK, Keasling JD.

J Biol Eng. 2011 Sep 20;5:12. doi: 10.1186/1754-1611-5-12.


Modular electron transfer circuits for synthetic biology: insulation of an engineered biohydrogen pathway.

Agapakis CM, Silver PA.

Bioeng Bugs. 2010 Nov-Dec;1(6):413-8. doi: 10.4161/bbug.1.6.12462.


Optimizing pentose utilization in yeast: the need for novel tools and approaches.

Young E, Lee SM, Alper H.

Biotechnol Biofuels. 2010 Nov 16;3:24. doi: 10.1186/1754-6834-3-24.


The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Alterovitz G, Muso T, Ramoni MF.

Brief Bioinform. 2010 Jan;11(1):80-95. doi: 10.1093/bib/bbp054. Epub 2009 Nov 11. Review.


Synthetic biology: understanding biological design from synthetic circuits.

Mukherji S, van Oudenaarden A.

Nat Rev Genet. 2009 Dec;10(12):859-71. doi: 10.1038/nrg2697. Epub 2009 Nov 10. Review.


Synthetic biology: ethical ramifications 2009.

Rabinow P, Bennett G.

Syst Synth Biol. 2009 Dec;3(1-4):99-108. doi: 10.1007/s11693-009-9042-7. Epub 2009 Oct 10.

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