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Items: 1 to 20 of 103


Generalizing cell segmentation and quantification.

Wang Z, Li H.

BMC Bioinformatics. 2017 Mar 23;18(1):189. doi: 10.1186/s12859-017-1604-1.


Accurate Detection of Dysmorphic Nuclei Using Dynamic Programming and Supervised Classification.

Verschuuren M, De Vylder J, Catrysse H, Robijns J, Philips W, De Vos WH.

PLoS One. 2017 Jan 26;12(1):e0170688. doi: 10.1371/journal.pone.0170688. eCollection 2017 Jan 26. Erratum in: PLoS One. 2017 Mar 6;12 (3):e0173701.


Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform.

Moutsatsos IK, Hossain I, Agarinis C, Harbinski F, Abraham Y, Dobler L, Zhang X, Wilson CJ, Jenkins JL, Holway N, Tallarico J, Parker CN.

SLAS Discov. 2017 Mar;22(3):238-249. doi: 10.1177/1087057116679993. Epub 2016 Dec 13.


Deep phenotyping unveils hidden traits and genetic relations in subtle mutants.

San-Miguel A, Kurshan PT, Crane MM, Zhao Y, McGrath PT, Shen K, Lu H.

Nat Commun. 2016 Nov 23;7:12990. doi: 10.1038/ncomms12990.


An Interactive Learning Framework for Scalable Classification of Pathology Images.

Nalisnik M, Gutman DA, Kong J, Cooper LA.

Proc IEEE Int Conf Big Data. 2015 Oct-Nov;2015:928-935. Epub 2015 Dec 28.


Case-specific potentiation of glioblastoma drugs by pterostilbene.

Schmidt L, Baskaran S, Johansson P, Padhan N, Matuszewski D, Green LC, Elfineh L, Wee S, Häggblad M, Martens U, Westermark B, Forsberg-Nilsson K, Uhrbom L, Claesson-Welsh L, Andäng M, Sintorn IM, Lundgren B, Lönnstedt I, Krona C, Nelander S.

Oncotarget. 2016 Nov 8;7(45):73200-73215. doi: 10.18632/oncotarget.12298.


An open-source solution for advanced imaging flow cytometry data analysis using machine learning.

Hennig H, Rees P, Blasi T, Kamentsky L, Hung J, Dao D, Carpenter AE, Filby A.

Methods. 2017 Jan 1;112:201-210. doi: 10.1016/j.ymeth.2016.08.018. Epub 2016 Sep 2.


The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic.

Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH.

Elife. 2016 Aug 11;5. pii: e16096. doi: 10.7554/eLife.16096.


CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets.

Dao D, Fraser AN, Hung J, Ljosa V, Singh S, Carpenter AE.

Bioinformatics. 2016 Oct 15;32(20):3210-3212. Epub 2016 Jun 26.


An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells.

Dordea AC, Bray MA, Allen K, Logan DJ, Fei F, Malhotra R, Gregory MS, Carpenter AE, Buys ES.

Exp Eye Res. 2016 Jun;147:50-6. doi: 10.1016/j.exer.2016.04.012. Epub 2016 Apr 24.


Quantitative non-invasive cell characterisation and discrimination based on multispectral autofluorescence features.

Gosnell ME, Anwer AG, Mahbub SB, Menon Perinchery S, Inglis DW, Adhikary PP, Jazayeri JA, Cahill MA, Saad S, Pollock CA, Sutton-McDowall ML, Thompson JG, Goldys EM.

Sci Rep. 2016 Mar 31;6:23453. doi: 10.1038/srep23453.


Nuquantus: Machine learning software for the characterization and quantification of cell nuclei in complex immunofluorescent tissue images.

Gross P, Honnorat N, Varol E, Wallner M, Trappanese DM, Sharp TE, Starosta T, Duran JM, Koller S, Davatzikos C, Houser SR.

Sci Rep. 2016 Mar 23;6:23431. doi: 10.1038/srep23431.


Breaking the Spell: Combating Multidrug Resistant 'Superbugs'.

Khan SN, Khan AU.

Front Microbiol. 2016 Feb 18;7:174. doi: 10.3389/fmicb.2016.00174. eCollection 2016 Feb 18. Review.


High-Throughput Method for Automated Colony and Cell Counting by Digital Image Analysis Based on Edge Detection.

Choudhry P.

PLoS One. 2016 Feb 5;11(2):e0148469. doi: 10.1371/journal.pone.0148469. eCollection 2016 Feb 5.


Tools for Single-Cell Kinetic Analysis of Virus-Host Interactions.

Warrick JW, Timm A, Swick A, Yin J.

PLoS One. 2016 Jan 11;11(1):e0145081. doi: 10.1371/journal.pone.0145081. eCollection 2016 Jan 11.


Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Xing F, Yang L.

IEEE Rev Biomed Eng. 2016;9:234-63. doi: 10.1109/RBME.2016.2515127. Epub 2016 Jan 6.


Label-free cell cycle analysis for high-throughput imaging flow cytometry.

Blasi T, Hennig H, Summers HD, Theis FJ, Cerveira J, Patterson JO, Davies D, Filby A, Carpenter AE, Rees P.

Nat Commun. 2016 Jan 7;7:10256. doi: 10.1038/ncomms10256.


Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification.

Logan DJ, Shan J, Bhatia SN, Carpenter AE.

Methods. 2016 Mar 1;96:6-11. doi: 10.1016/j.ymeth.2015.12.002. Epub 2015 Dec 11.


Time series modeling of live-cell shape dynamics for image-based phenotypic profiling.

Gordonov S, Hwang MK, Wells A, Gertler FB, Lauffenburger DA, Bathe M.

Integr Biol (Camb). 2016 Jan;8(1):73-90. doi: 10.1039/c5ib00283d. Epub 2015 Dec 11.


Fibrous scaffolds for building hearts and heart parts.

Capulli AK, MacQueen LA, Sheehy SP, Parker KK.

Adv Drug Deliv Rev. 2016 Jan 15;96:83-102. doi: 10.1016/j.addr.2015.11.020. Epub 2015 Dec 4. Review.

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