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Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae.

Kyriakou D, Stavrou E, Demosthenous P, Angelidou G, San Luis BJ, Boone C, Promponas VJ, Kirmizis A.

BMC Biol. 2016 Dec 7;14(1):106.


Selective suppression of antisense transcription by Set2-mediated H3K36 methylation.

Venkatesh S, Li H, Gogol MM, Workman JL.

Nat Commun. 2016 Nov 28;7:13610. doi: 10.1038/ncomms13610.


Histone modifications facilitate the coexpression of bidirectional promoters in rice.

Fang Y, Wang L, Wang X, You Q, Pan X, Xiao J, Wang XE, Wu Y, Su Z, Zhang W.

BMC Genomics. 2016 Sep 30;17(1):768.


Functional characterization of open chromatin in bidirectional promoters of rice.

Fang Y, Wang X, Wang L, Pan X, Xiao J, Wang XE, Wu Y, Zhang W.

Sci Rep. 2016 Aug 25;6:32088. doi: 10.1038/srep32088.


Common genomic elements promote transcriptional and DNA replication roadblocks.

Roy K, Gabunilas J, Gillespie A, Ngo D, Chanfreau GF.

Genome Res. 2016 Oct;26(10):1363-1375.


Backmasking in the yeast genome: encoding overlapping information for protein-coding and RNA degradation.

Cakiroglu SA, Zaugg JB, Luscombe NM.

Nucleic Acids Res. 2016 Sep 30;44(17):8065-72. doi: 10.1093/nar/gkw683.


Full transcription of the chloroplast genome in photosynthetic eukaryotes.

Shi C, Wang S, Xia EH, Jiang JJ, Zeng FC, Gao LZ.

Sci Rep. 2016 Jul 26;6:30135. doi: 10.1038/srep30135.


Evidence for Regulation of ECM3 Expression by Methylation of Histone H3 Lysine 4 and Intergenic Transcription in Saccharomyces cerevisiae.

Raupach EA, Martens JA, Arndt KM.

G3 (Bethesda). 2016 Sep 8;6(9):2971-81. doi: 10.1534/g3.116.033118.


Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.

Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M.

RNA Biol. 2016 Sep;13(9):772-82. doi: 10.1080/15476286.2016.1191738.


Androgen-induced Long Noncoding RNA (lncRNA) SOCS2-AS1 Promotes Cell Growth and Inhibits Apoptosis in Prostate Cancer Cells.

Misawa A, Takayama K, Urano T, Inoue S.

J Biol Chem. 2016 Aug 19;291(34):17861-80. doi: 10.1074/jbc.M116.718536.


Protein Abundance Control by Non-coding Antisense Transcription.

Huber F, Bunina D, Gupta I, Khmelinskii A, Meurer M, Theer P, Steinmetz LM, Knop M.

Cell Rep. 2016 Jun 21;15(12):2625-36. doi: 10.1016/j.celrep.2016.05.043.


Strand-specific, high-resolution mapping of modified RNA polymerase II.

Milligan L, Huynh-Thu VA, Delan-Forino C, Tuck A, Petfalski E, LombraƱa R, Sanguinetti G, Kudla G, Tollervey D.

Mol Syst Biol. 2016 Jun 10;12(6):874. doi: 10.15252/msb.20166869.


Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast.

Booth GT, Wang IX, Cheung VG, Lis JT.

Genome Res. 2016 Jun;26(6):799-811. doi: 10.1101/gr.204578.116.


Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae.

Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D.

Genetics. 2016 Jul;203(3):1469-81. doi: 10.1534/genetics.115.185363.


The Role of Transcription Factors at Antisense-Expressing Gene Pairs in Yeast.

Mostovoy Y, Thiemicke A, Hsu TY, Brem RB.

Genome Biol Evol. 2016 Jun 27;8(6):1748-61. doi: 10.1093/gbe/evw104.


Enhancement of Transcription by a Splicing-Competent Intron Is Dependent on Promoter Directionality.

Agarwal N, Ansari A.

PLoS Genet. 2016 May 6;12(5):e1006047. doi: 10.1371/journal.pgen.1006047.


Noncoding Transcription Is a Driving Force for Nucleosome Instability in spt16 Mutant Cells.

Feng J, Gan H, Eaton ML, Zhou H, Li S, Belsky JA, MacAlpine DM, Zhang Z, Li Q.

Mol Cell Biol. 2016 Jun 15;36(13):1856-67. doi: 10.1128/MCB.00152-16.


Survey of cryptic unstable transcripts in yeast.

Vera JM, Dowell RD.

BMC Genomics. 2016 Apr 26;17:305. doi: 10.1186/s12864-016-2622-5.


Expansion of antisense lncRNA transcriptomes in budding yeast species since the loss of RNAi.

Alcid EA, Tsukiyama T.

Nat Struct Mol Biol. 2016 May;23(5):450-5. doi: 10.1038/nsmb.3192.


Local potentiation of stress-responsive genes by upstream noncoding transcription.

Takemata N, Oda A, Yamada T, Galipon J, Miyoshi T, Suzuki Y, Sugano S, Hoffman CS, Hirota K, Ohta K.

Nucleic Acids Res. 2016 Jun 20;44(11):5174-89. doi: 10.1093/nar/gkw142.

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