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Items: 1 to 20 of 53

1.

A Primer on Infectious Disease Bacterial Genomics.

Lynch T, Petkau A, Knox N, Graham M, Van Domselaar G.

Clin Microbiol Rev. 2016 Oct;29(4):881-913. doi: 10.1128/CMR.00001-16. Epub 2016 Sep 7. Review.

PMID:
28590251
2.

Overview of the impact of Typhoid and Paratyphoid fever. Utility of Ty21a vaccine (Vivotif®).

Amicizia D, Arata L, Zangrillo F, Panatto D, Gasparini R.

J Prev Med Hyg. 2017 Mar;58(1):E1-E8. Review.

3.

Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program.

Dyson ZA, Thanh DP, Bodhidatta L, Mason CJ, Srijan A, Rabaa MA, Vinh PV, Thanh TH, Thwaites GE, Baker S, Holt KE.

PLoS Negl Trop Dis. 2017 Jan 6;11(1):e0005274. doi: 10.1371/journal.pntd.0005274. eCollection 2017 Jan.

4.

Identification of Five Novel Salmonella Typhi-Specific Genes as Markers for Diagnosis of Typhoid Fever Using Single-Gene Target PCR Assays.

Goay YX, Chin KL, Tan CL, Yeoh CY, Ja'afar JN, Zaidah AR, Chinni SV, Phua KK.

Biomed Res Int. 2016;2016:8905675. Epub 2016 Nov 15.

5.

Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host.

Klemm EJ, Gkrania-Klotsas E, Hadfield J, Forbester JL, Harris SR, Hale C, Heath JN, Wileman T, Clare S, Kane L, Goulding D, Otto TD, Kay S, Doffinger R, Cooke FJ, Carmichael A, Lever AM, Parkhill J, MacLennan CA, Kumararatne D, Dougan G, Kingsley RA.

Nat Microbiol. 2016 Mar;1(3). pii: 15023. Epub 2016 Jan 25.

6.

Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila.

Shapiro LR, Scully ED, Straub TJ, Park J, Stephenson AG, Beattie GA, Gleason ML, Kolter R, Coelho MC, De Moraes CM, Mescher MC, Zhaxybayeva O.

Genome Biol Evol. 2016 Mar 18;8(3):649-64. doi: 10.1093/gbe/evw016.

7.

Gene expression profiling gut microbiota in different races of humans.

Chen L, Zhang YH, Huang T, Cai YD.

Sci Rep. 2016 Mar 15;6:23075. doi: 10.1038/srep23075.

8.

Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types.

Yap KP, Ho WS, Gan HM, Chai LC, Thong KL.

Front Microbiol. 2016 Mar 2;7:270. doi: 10.3389/fmicb.2016.00270. eCollection 2016.

9.

Antibiotic binding of STY3178, a yfdX protein from Salmonella Typhi.

Saha P, Manna C, Das S, Ghosh M.

Sci Rep. 2016 Feb 19;6:21305. doi: 10.1038/srep21305.

10.

Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures.

Fu Y, Xu ZZ, Lu ZJ, Zhao S, Mathews DH.

PLoS One. 2015 Jun 15;10(6):e0130200. doi: 10.1371/journal.pone.0130200. eCollection 2015.

11.

Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum.

Matthews TD, Schmieder R, Silva GG, Busch J, Cassman N, Dutilh BE, Green D, Matlock B, Heffernan B, Olsen GJ, Farris Hanna L, Schifferli DM, Maloy S, Dinsdale EA, Edwards RA.

PLoS One. 2015 Jun 3;10(6):e0126883. doi: 10.1371/journal.pone.0126883. eCollection 2015.

12.

Salmonella, Shigella, and yersinia.

Dekker JP, Frank KM.

Clin Lab Med. 2015 Jun;35(2):225-46. doi: 10.1016/j.cll.2015.02.002. Epub 2015 Apr 2. Review.

13.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.

Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G.

Nat Genet. 2015 Jun;47(6):632-9. doi: 10.1038/ng.3281. Epub 2015 May 11.

14.

Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa.

Okoro CK, Barquist L, Connor TR, Harris SR, Clare S, Stevens MP, Arends MJ, Hale C, Kane L, Pickard DJ, Hill J, Harcourt K, Parkhill J, Dougan G, Kingsley RA.

PLoS Negl Trop Dis. 2015 Mar 24;9(3):e0003611. doi: 10.1371/journal.pntd.0003611. eCollection 2015 Mar. Erratum in: PLoS Negl Trop Dis. 2015 Jun;9(6):e0003848. PLoS Negl Trop Dis. 2015 Aug;9(8):e0003970.

15.

Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.

Baddam R, Kumar N, Shaik S, Lankapalli AK, Ahmed N.

Sci Rep. 2014 Dec 12;4:7457. doi: 10.1038/srep07457.

16.

Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever.

Zhou Z, McCann A, Weill FX, Blin C, Nair S, Wain J, Dougan G, Achtman M.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12199-204. doi: 10.1073/pnas.1411012111. Epub 2014 Aug 4.

17.

Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever.

Näsström E, Vu Thieu NT, Dongol S, Karkey A, Voong Vinh P, Ha Thanh T, Johansson A, Arjyal A, Thwaites G, Dolecek C, Basnyat B, Baker S, Antti H.

Elife. 2014 Jun 5;3. doi: 10.7554/eLife.03100.

18.

Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States.

Rodriguez-Rivera LD, Moreno Switt AI, Degoricija L, Fang R, Cummings CA, Furtado MR, Wiedmann M, den Bakker HC.

BMC Genomics. 2014 Jun 4;15:427. doi: 10.1186/1471-2164-15-427.

19.

Comparative analysis of Salmonella genomes identifies a metabolic network for escalating growth in the inflamed gut.

Nuccio SP, Bäumler AJ.

MBio. 2014 Mar 18;5(2):e00929-14. doi: 10.1128/mBio.00929-14.

20.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Gallinarum Biovar Pullorum Strain FCAV198, a Brazilian Chicken Pathogen.

Batista DF, Freitas Neto OC, Leite LR, Varani AM, Araujo FM, Salim A, Almeida AM, Ribeiro SA, Oliveira GC, Barrow PA, Berchieri Junior A.

Genome Announc. 2014 Feb 20;2(1). pii: e00028-14. doi: 10.1128/genomeA.00028-14.

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