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Items: 13


Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain.

Scheckel C, Drapeau E, Frias MA, Park CY, Fak J, Zucker-Scharff I, Kou Y, Haroutunian V, Ma'ayan A, Buxbaum JD, Darnell RB.

Elife. 2016 Feb 19;5. pii: e10421. doi: 10.7554/eLife.10421.


DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks.

Nguyen LK, Degasperi A, Cotter P, Kholodenko BN.

Sci Rep. 2015 Jul 29;5:12569. doi: 10.1038/srep12569.


Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks.

Hsieh WT, Tzeng KR, Ciou JS, Tsai JJ, Kurubanjerdjit N, Huang CH, Ng KL.

BMC Syst Biol. 2015;9 Suppl 1:S5. doi: 10.1186/1752-0509-9-S1-S5. Epub 2015 Jan 21.


DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics.

Liu L, Lei J, Sanders SJ, Willsey AJ, Kou Y, Cicek AE, Klei L, Lu C, He X, Li M, Muhle RA, Ma'ayan A, Noonan JP, Sestan N, McFadden KA, State MW, Buxbaum JD, Devlin B, Roeder K.

Mol Autism. 2014 Mar 6;5(1):22. doi: 10.1186/2040-2392-5-22.


RMOD: a tool for regulatory motif detection in signaling network.

Kim J, Yi GS.

PLoS One. 2013 Jul 12;8(7):e68407. doi: 10.1371/journal.pone.0068407. Print 2013.


Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes.

Mazloom AR, Dannenfelser R, Clark NR, Grigoryan AV, Linder KM, Cardozo TJ, Bond JC, Boran AD, Iyengar R, Malovannaya A, Lanz RB, Ma'ayan A.

PLoS Comput Biol. 2011 Dec;7(12):e1002319. doi: 10.1371/journal.pcbi.1002319. Epub 2011 Dec 29.


Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.

Chen EY, Xu H, Gordonov S, Lim MP, Perkins MH, Ma'ayan A.

Bioinformatics. 2012 Jan 1;28(1):105-11. doi: 10.1093/bioinformatics/btr625. Epub 2011 Nov 10.


Chronic morphine alters the presynaptic protein profile: identification of novel molecular targets using proteomics and network analysis.

Abul-Husn NS, Annangudi SP, Ma'ayan A, Ramos-Ortolaza DL, Stockton SD Jr, Gomes I, Sweedler JV, Devi LA.

PLoS One. 2011;6(10):e25535. doi: 10.1371/journal.pone.0025535. Epub 2011 Oct 17.


Introduction to network analysis in systems biology.

Ma'ayan A.

Sci Signal. 2011 Sep 6;4(190):tr5. doi: 10.1126/scisignal.2001965.


Systems biology--biomedical modeling.

Sobie EA, Lee YS, Jenkins SL, Iyengar R.

Sci Signal. 2011 Sep 6;4(190):tr2. doi: 10.1126/scisignal.2001989. Review.


Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network.

Jailkhani N, Ravichandran S, Hegde SR, Siddiqui Z, Mande SC, Rao KV.

Genome Res. 2011 Dec;21(12):2067-81. doi: 10.1101/gr.116145.110. Epub 2011 Aug 24.


STATus and Context within the Mammalian Nervous System.

Rajan P.

Mol Med. 2011 Sep-Oct;17(9-10):965-73. doi: 10.2119/molmed.2010.00259. Epub 2011 May 20. Review.


Systems approach to explore components and interactions in the presynapse.

Abul-Husn NS, Bushlin I, MorĂ³n JA, Jenkins SL, Dolios G, Wang R, Iyengar R, Ma'ayan A, Devi LA.

Proteomics. 2009 Jun;9(12):3303-15. doi: 10.1002/pmic.200800767.

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