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Items: 9

1.

Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations.

Perilla JR, Schulten K.

Nat Commun. 2017 Jul 19;8:15959. doi: 10.1038/ncomms15959.

2.

Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas.

Degli Esposti D, Sklias A, Lima SC, Beghelli-de la Forest Divonne S, Cahais V, Fernandez-Jimenez N, Cros MP, Ecsedi S, Cuenin C, Bouaoun L, Byrnes G, Accardi R, Sudaka A, Giordanengo V, Hernandez-Vargas H, Pinto LF, Van Obberghen-Schilling E, Herceg Z.

Genome Med. 2017 Apr 5;9(1):33. doi: 10.1186/s13073-017-0419-z.

3.

Correcting for Measurement Error in Time-Varying Covariates in Marginal Structural Models.

Kyle RP, Moodie EE, Klein MB, Abrahamowicz M.

Am J Epidemiol. 2016 Aug 1;184(3):249-58. doi: 10.1093/aje/kww068. Epub 2016 Jul 13.

4.

Parallel classification and feature selection in microarray data using SPRINT.

Mitchell L, Sloan TM, Mewissen M, Ghazal P, Forster T, Piotrowski M, Trew A.

Concurr Comput. 2014 Mar 25;26(4):854-865.

5.

Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes.

Wang Y, Goh W, Wong L, Montana G; Alzheimer's Disease Neuroimaging Initiative.

BMC Bioinformatics. 2013;14 Suppl 16:S6. doi: 10.1186/1471-2105-14-S16-S6. Epub 2013 Oct 22.

6.

Optimization of a parallel permutation testing function for the SPRINT R package.

Petrou S, Sloan TM, Mewissen M, Forster T, Piotrowski M, Dobrzelecki B, Ghazal P, Trew A, Hill J.

Concurr Comput. 2011 Dec 10;23(17):2258-2268. Epub 2011 Jun 23.

7.

Exploiting parallel R in the cloud with SPRINT.

Piotrowski M, McGilvary GA, Sloan TM, Mewissen M, Lloyd AD, Forster T, Mitchell L, Ghazal P, Hill J.

Methods Inf Med. 2013;52(1):80-90. doi: 10.3414/ME11-02-0039. Epub 2012 Dec 7.

8.

ParallABEL: an R library for generalized parallelization of genome-wide association studies.

Sangket U, Mahasirimongkol S, Chantratita W, Tandayya P, Aulchenko YS.

BMC Bioinformatics. 2010 Apr 29;11:217. doi: 10.1186/1471-2105-11-217.

9.

A highly efficient multi-core algorithm for clustering extremely large datasets.

Kraus JM, Kestler HA.

BMC Bioinformatics. 2010 Apr 6;11:169. doi: 10.1186/1471-2105-11-169.

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