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Items: 1 to 20 of 51

1.

Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.

Chae S, Kim JS, Jun KM, Lee SB, Kim MS, Nahm BH, Kim YK.

Mol Cells. 2017 Oct;40(10):714-730. doi: 10.14348/molcells.2017.2297. Epub 2017 Oct 19.

2.

Splice variants as novel targets in pancreatic ductal adenocarcinoma.

Wang J, Dumartin L, Mafficini A, Ulug P, Sangaralingam A, Alamiry NA, Radon TP, Salvia R, Lawlor RT, Lemoine NR, Scarpa A, Chelala C, Crnogorac-Jurcevic T.

Sci Rep. 2017 Jun 7;7(1):2980. doi: 10.1038/s41598-017-03354-z.

3.

Mis-Spliced Lr34 Transcript Events in Winter Wheat.

Fang T, Carver BF, Hunger RM, Yan L.

PLoS One. 2017 Jan 30;12(1):e0171149. doi: 10.1371/journal.pone.0171149. eCollection 2017.

4.

A method for identifying discriminative isoform-specific peptides for clinical proteomics application.

Zhang F, Chen JY.

BMC Genomics. 2016 Aug 22;17 Suppl 7:522. doi: 10.1186/s12864-016-2907-8.

5.

The Functional Human C-Terminome.

Sharma S, Toledo O, Hedden M, Lyon KF, Brooks SB, David RP, Limtong J, Newsome JM, Novakovic N, Rajasekaran S, Thapar V, Williams SR, Schiller MR.

PLoS One. 2016 Apr 6;11(4):e0152731. doi: 10.1371/journal.pone.0152731. eCollection 2016.

6.

Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond.

Pfau T, Pacheco MP, Sauter T.

Brief Bioinform. 2016 Nov;17(6):1060-1069. Epub 2015 Nov 28.

7.

Methylomic trajectories across human fetal brain development.

Spiers H, Hannon E, Schalkwyk LC, Smith R, Wong CC, O'Donovan MC, Bray NJ, Mill J.

Genome Res. 2015 Mar;25(3):338-52. doi: 10.1101/gr.180273.114. Epub 2015 Feb 3.

8.

A pan-cancer analysis of alternative splicing events reveals novel tumor-associated splice variants of matriptase.

Dargahi D, Swayze RD, Yee L, Bergqvist PJ, Hedberg BJ, Heravi-Moussavi A, Dullaghan EM, Dercho R, An J, Babcook JS, Jones SJ.

Cancer Inform. 2014 Dec 4;13:167-77. doi: 10.4137/CIN.S19435. eCollection 2014.

9.

Molecular evolution of NASP and conserved histone H3/H4 transport pathway.

Nabeel-Shah S, Ashraf K, Pearlman RE, Fillingham J.

BMC Evol Biol. 2014 Jun 20;14:139. doi: 10.1186/1471-2148-14-139.

10.

ARH-seq: identification of differential splicing in RNA-seq data.

Rasche A, Lienhard M, Yaspo ML, Lehrach H, Herwig R.

Nucleic Acids Res. 2014 Aug;42(14):e110. doi: 10.1093/nar/gku495. Epub 2014 Jun 11.

11.

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.

Hoffmann S, Otto C, Doose G, Tanzer A, Langenberger D, Christ S, Kunz M, Holdt LM, Teupser D, Hackermüller J, Stadler PF.

Genome Biol. 2014 Feb 10;15(2):R34. doi: 10.1186/gb-2014-15-2-r34.

12.

SASD: the Synthetic Alternative Splicing Database for identifying novel isoform from proteomics.

Zhang F, Drabier R.

BMC Bioinformatics. 2013;14 Suppl 14:S13. doi: 10.1186/1471-2105-14-S14-S13. Epub 2013 Oct 9.

13.

Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity.

Roy B, Haupt LM, Griffiths LR.

Curr Genomics. 2013 May;14(3):182-94. doi: 10.2174/1389202911314030004.

14.

Associations between intronic non-B DNA structures and exon skipping.

Tsai ZT, Chu WY, Cheng JH, Tsai HK.

Nucleic Acids Res. 2014 Jan;42(2):739-47. doi: 10.1093/nar/gkt939. Epub 2013 Oct 22.

15.

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array.

Slieker RC, Bos SD, Goeman JJ, Bovée JV, Talens RP, van der Breggen R, Suchiman HE, Lameijer EW, Putter H, van den Akker EB, Zhang Y, Jukema JW, Slagboom PE, Meulenbelt I, Heijmans BT.

Epigenetics Chromatin. 2013 Aug 6;6(1):26. doi: 10.1186/1756-8935-6-26.

16.

DBATE: database of alternative transcripts expression.

Bianchi V, Colantoni A, Calderone A, Ausiello G, Ferrè F, Helmer-Citterich M.

Database (Oxford). 2013 Jul 9;2013:bat050. doi: 10.1093/database/bat050. Print 2013.

17.

Alternative splicing for diseases, cancers, drugs, and databases.

Tang JY, Lee JC, Hou MF, Wang CL, Chen CC, Huang HW, Chang HW.

ScientificWorldJournal. 2013 May 22;2013:703568. doi: 10.1155/2013/703568. Print 2013. Review.

18.

Arginine68 is an essential residue for the C-terminal cleavage of human Atg8 family proteins.

Liu C, Ma H, Wu J, Huang Q, Liu JO, Yu L.

BMC Cell Biol. 2013 May 30;14:27. doi: 10.1186/1471-2121-14-27.

19.

HEXEvent: a database of Human EXon splicing Events.

Busch A, Hertel KJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D118-24. doi: 10.1093/nar/gks969. Epub 2012 Oct 31.

20.

The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density.

Stranzl T, Larsen MV, Lund O, Nielsen M, Brunak S.

PLoS One. 2012;7(9):e38670. doi: 10.1371/journal.pone.0038670. Epub 2012 Sep 25.

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