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Intercompartmental Piecewise Gene Transfer.

Szafranski P.

Genes (Basel). 2017 Oct 6;8(10). pii: E260. doi: 10.3390/genes8100260. Review.


Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium.

Park S, Ruhlman TA, Weng ML, Hajrah NH, Sabir JSM, Jansen RK.

Genome Biol Evol. 2017 Jun 1;9(6):1766-1780. doi: 10.1093/gbe/evx124.


Diatom centromeres suggest a mechanism for nuclear DNA acquisition.

Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA Jr, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD.

Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):E6015-E6024. doi: 10.1073/pnas.1700764114. Epub 2017 Jul 3.


A Plastid Protein That Evolved from Ubiquitin and Is Required for Apicoplast Protein Import in Toxoplasma gondii.

Fellows JD, Cipriano MJ, Agrawal S, Striepen B.

MBio. 2017 Jun 27;8(3). pii: e00950-17. doi: 10.1128/mBio.00950-17.


Putting DNA methylation in context: from genomes to gene expression in plants.

Niederhuth CE, Schmitz RJ.

Biochim Biophys Acta. 2017 Jan;1860(1):149-156. doi: 10.1016/j.bbagrm.2016.08.009. Epub 2016 Aug 30. Review.


Chloroplasts: state of research and practical applications of plastome sequencing.

Olejniczak SA, Łojewska E, Kowalczyk T, Sakowicz T.

Planta. 2016 Sep;244(3):517-27. doi: 10.1007/s00425-016-2551-1. Epub 2016 Jun 3. Review.


Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae.

Weng ML, Ruhlman TA, Jansen RK.

Genome Biol Evol. 2016 Jun 27;8(6):1824-38. doi: 10.1093/gbe/evw115.


Is chloroplastic class IIA aldolase a marine enzyme?

Miyasaka H, Ogata T, Tanaka S, Ohama T, Kano S, Kazuhiro F, Hayashi S, Yamamoto S, Takahashi H, Matsuura H, Hirata K.

ISME J. 2016 Nov;10(11):2767-2772. doi: 10.1038/ismej.2016.52. Epub 2016 Apr 8.


Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera.

Massouh A, Schubert J, Yaneva-Roder L, Ulbricht-Jones ES, Zupok A, Johnson MT, Wright SI, Pellizzer T, Sobanski J, Bock R, Greiner S.

Plant Cell. 2016 Apr;28(4):911-29. doi: 10.1105/tpc.15.00879. Epub 2016 Apr 6.


Towards understanding the evolution and functional diversification of DNA-containing plant organelles.

Leister D.

F1000Res. 2016 Mar 11;5. pii: F1000 Faculty Rev-330. doi: 10.12688/f1000research.7915.1. eCollection 2016. Review.


Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field.

Roux F, Mary-Huard T, Barillot E, Wenes E, Botran L, Durand S, Villoutreix R, Martin-Magniette ML, Camilleri C, Budar F.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3687-92. doi: 10.1073/pnas.1520687113. Epub 2016 Mar 15.


Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding.

Kersten B, Faivre Rampant P, Mader M, Le Paslier MC, Bounon R, Berard A, Vettori C, Schroeder H, Leplé JC, Fladung M.

PLoS One. 2016 Jan 22;11(1):e0147209. doi: 10.1371/journal.pone.0147209. eCollection 2016.


Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.

Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I.

Genome Biol Evol. 2015 Dec 8;8(1):29-41. doi: 10.1093/gbe/evv244.


Diversification of DnaA dependency for DNA replication in cyanobacterial evolution.

Ohbayashi R, Watanabe S, Ehira S, Kanesaki Y, Chibazakura T, Yoshikawa H.

ISME J. 2016 May;10(5):1113-21. doi: 10.1038/ismej.2015.194. Epub 2015 Oct 30.


Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize.

Lough AN, Faries KM, Koo DH, Hussain A, Roark LM, Langewisch TL, Backes T, Kremling KA, Jiang J, Birchler JA, Newton KJ.

G3 (Bethesda). 2015 Sep 1;5(11):2229-39. doi: 10.1534/g3.115.020677.


Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology.

Rogalski M, do Nascimento Vieira L, Fraga HP, Guerra MP.

Front Plant Sci. 2015 Jul 30;6:586. doi: 10.3389/fpls.2015.00586. eCollection 2015. Review.


Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus.

Ma PF, Zhang YX, Guo ZH, Li DZ.

Sci Rep. 2015 Jun 23;5:11608. doi: 10.1038/srep11608.


Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome.

Lin CP, Ko CY, Kuo CI, Liu MS, Schafleitner R, Chen LF.

PLoS One. 2015 Jun 15;10(6):e0129396. doi: 10.1371/journal.pone.0129396. eCollection 2015.


The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.

Yao X, Tang P, Li Z, Li D, Liu Y, Huang H.

PLoS One. 2015 Jun 5;10(6):e0129347. doi: 10.1371/journal.pone.0129347. eCollection 2015.

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