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Items: 1 to 20 of 251


The spatiotemporal system dynamics of acquired resistance in an engineered microecology.

Datla US, Mather WH, Chen S, Shoultz IW, Täuber UC, Jones CN, Butzin NC.

Sci Rep. 2017 Nov 22;7(1):16071. doi: 10.1038/s41598-017-16176-w.


Shaping bacterial population behavior through computer-interfaced control of individual cells.

Chait R, Ruess J, Bergmiller T, Tkačik G, Guet CC.

Nat Commun. 2017 Nov 16;8(1):1535. doi: 10.1038/s41467-017-01683-1.


Building Predictive Models of Genetic Circuits Using the Principle of Maximum Caliber.

Firman T, Balázsi G, Ghosh K.

Biophys J. 2017 Nov 7;113(9):2121-2130. doi: 10.1016/j.bpj.2017.08.057.


Stability of Wake-Sleep Cycles Requires Robust Degradation of the PERIOD Protein.

D'Alessandro M, Beesley S, Kim JK, Jones Z, Chen R, Wi J, Kyle K, Vera D, Pagano M, Nowakowski R, Lee C.

Curr Biol. 2017 Nov 20;27(22):3454-3467.e8. doi: 10.1016/j.cub.2017.10.014. Epub 2017 Nov 2.


Synchrony and pattern formation of coupled genetic oscillators on a chip of artificial cells.

Tayar AM, Karzbrun E, Noireaux V, Bar-Ziv RH.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11609-11614. doi: 10.1073/pnas.1710620114. Epub 2017 Oct 16.


An excitable Rho GTPase signaling network generates dynamic subcellular contraction patterns.

Graessl M, Koch J, Calderon A, Kamps D, Banerjee S, Mazel T, Schulze N, Jungkurth JK, Patwardhan R, Solouk D, Hampe N, Hoffmann B, Dehmelt L, Nalbant P.

J Cell Biol. 2017 Dec 4;216(12):4271-4285. doi: 10.1083/jcb.201706052. Epub 2017 Oct 20.


Logic Synthesis of Recombinase-Based Genetic Circuits.

Chiu TY, Jiang JR.

Sci Rep. 2017 Oct 9;7(1):12873. doi: 10.1038/s41598-017-07386-3.


Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks.

Gomez MM, Sadeghpour M, Bennett MR, Orosz G, Murray RM.

SIAM J Appl Dyn Syst. 2016;15(4):1844-1873. doi: 10.1137/15M1031965. Epub 2016 Oct 13.


Emergent "Quantum" Theory in Complex Adaptive Systems.

Minic D, Pajevic S.

Mod Phys Lett B. 2016 Apr 30;30(11). pii: 1650201. doi: 10.1142/S0217984916502018. Epub 2016 Mar 29.


Grip on complexity in chemical reaction networks.

Wong ASY, Huck WTS.

Beilstein J Org Chem. 2017 Jul 28;13:1486-1497. doi: 10.3762/bjoc.13.147. eCollection 2017. Review.


Incoherent Inputs Enhance the Robustness of Biological Oscillators.

Li Z, Liu S, Yang Q.

Cell Syst. 2017 Jul 26;5(1):72-81.e4. doi: 10.1016/j.cels.2017.06.013.


A synthetic multi-cellular network of coupled self-sustained oscillators.

Fernández-Niño M, Giraldo D, Gomez-Porras JL, Dreyer I, González Barrios AF, Arevalo-Ferro C.

PLoS One. 2017 Jun 29;12(6):e0180155. doi: 10.1371/journal.pone.0180155. eCollection 2017.


Coupled feedback loops control the stimulus-dependent dynamics of the yeast transcription factor Msn2.

Jiang Y, AkhavanAghdam Z, Tsimring LS, Hao N.

J Biol Chem. 2017 Jul 28;292(30):12366-12372. doi: 10.1074/jbc.C117.800896. Epub 2017 Jun 21.


A photoconversion model for full spectral programming and multiplexing of optogenetic systems.

Olson EJ, Tzouanas CN, Tabor JJ.

Mol Syst Biol. 2017 Apr 24;13(4):926. doi: 10.15252/msb.20167456.


Engineering of a synthetic quadrastable gene network to approach Waddington landscape and cell fate determination.

Wu F, Su RQ, Lai YC, Wang X.

Elife. 2017 Apr 11;6. pii: e23702. doi: 10.7554/eLife.23702.


Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells.

Weinberg BH, Pham NTH, Caraballo LD, Lozanoski T, Engel A, Bhatia S, Wong WW.

Nat Biotechnol. 2017 May;35(5):453-462. doi: 10.1038/nbt.3805. Epub 2017 Mar 27.


Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations.

Baum K, Politi AZ, Kofahl B, Steuer R, Wolf J.

PLoS Comput Biol. 2016 Dec 27;12(12):e1005298. doi: 10.1371/journal.pcbi.1005298. eCollection 2016 Dec.


Identifying ultrasensitive HGF dose-response functions in a 3D mammalian system for synthetic morphogenesis.

Senthivel VR, Sturrock M, Piedrafita G, Isalan M.

Sci Rep. 2016 Dec 16;6:39178. doi: 10.1038/srep39178.


Design Principles of Biological Oscillators through Optimization: Forward and Reverse Analysis.

Otero-Muras I, Banga JR.

PLoS One. 2016 Dec 15;11(12):e0166867. doi: 10.1371/journal.pone.0166867. eCollection 2016.


Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator.

Pett JP, Korenčič A, Wesener F, Kramer A, Herzel H.

PLoS Comput Biol. 2016 Dec 12;12(12):e1005266. doi: 10.1371/journal.pcbi.1005266. eCollection 2016 Dec.

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