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Items: 20

1.

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.

Gimode D, Odeny DA, de Villiers EP, Wanyonyi S, Dida MM, Mneney EE, Muchugi A, Machuka J, de Villiers SM.

PLoS One. 2016 Jul 25;11(7):e0159437. doi: 10.1371/journal.pone.0159437.

2.

ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.

Sablok G, Padma Raju GV, Mudunuri SB, Prabha R, Singh DP, Baev V, Yahubyan G, Ralph PJ, La Porta N.

Database (Oxford). 2015 Sep 27;2015. pii: bav084. doi: 10.1093/database/bav084.

3.

FMiR: A Curated Resource of Mitochondrial DNA Information for Fish.

Nagpure NS, Rashid I, Pathak AK, Singh M, Pati R, Singh SP, Sarkar UK.

PLoS One. 2015 Aug 28;10(8):e0136711. doi: 10.1371/journal.pone.0136711.

4.

The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?

Smith DR.

Brief Funct Genomics. 2016 Jan;15(1):47-54. doi: 10.1093/bfgp/elv027. Review.

5.

Analyses of the complete genome and gene expression of chloroplast of sweet potato [Ipomoea batata].

Yan L, Lai X, Li X, Wei C, Tan X, Zhang Y.

PLoS One. 2015 Apr 15;10(4):e0124083. doi: 10.1371/journal.pone.0124083.

6.

MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes.

Kannan S, Rogozin IB, Koonin EV.

BMC Evol Biol. 2014 Nov 25;14:237. doi: 10.1186/s12862-014-0237-5.

7.

Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs.

Wang D, Yu J.

Nucleic Acids Res. 2015 Jan;43(Database issue):D990-5. doi: 10.1093/nar/gku1070.

8.

The 203 kbp mitochondrial genome of the phytopathogenic fungus Sclerotinia borealis reveals multiple invasions of introns and genomic duplications.

Mardanov AV, Beletsky AV, Kadnikov VV, Ignatov AN, Ravin NV.

PLoS One. 2014 Sep 12;9(9):e107536. doi: 10.1371/journal.pone.0107536.

9.

Characterization and phylogenetic analysis of the mitochondrial genome of Glarea lozoyensis indicates high diversity within the order Helotiales.

Youssar L, Grüning BA, Günther S, Hüttel W.

PLoS One. 2013 Sep 25;8(9):e74792. doi: 10.1371/journal.pone.0074792.

10.

MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, Nishida M.

Mol Biol Evol. 2013 Nov;30(11):2531-40. doi: 10.1093/molbev/mst141.

11.

RNA editing and drug discovery for cancer therapy.

Huang WH, Tseng CN, Tang JY, Yang CH, Liang SS, Chang HW.

ScientificWorldJournal. 2013 Apr 24;2013:804505. doi: 10.1155/2013/804505. Review.

12.

ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics.

Sablok G, Mudunuri SB, Patnana S, Popova M, Fares MA, Porta NL.

DNA Res. 2013 Apr;20(2):127-33. doi: 10.1093/dnares/dss038.

13.

Frequent gain and loss of introns in fungal cytochrome b genes.

Yin LF, Hu MJ, Wang F, Kuang H, Zhang Y, Schnabel G, Li GQ, Luo CX.

PLoS One. 2012;7(11):e49096. doi: 10.1371/journal.pone.0049096.

14.
15.

Biogenesis of the cytochrome bc(1) complex and role of assembly factors.

Smith PM, Fox JL, Winge DR.

Biochim Biophys Acta. 2012 Feb;1817(2):276-86. doi: 10.1016/j.bbabio.2011.11.009. Review. Corrected and republished in: Biochim Biophys Acta. 2012 Jun;1817(6):872-82.

16.

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.

D'Onorio de Meo P, D'Antonio M, Griggio F, Lupi R, Borsani M, Pavesi G, Castrignanò T, Pesole G, Gissi C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1168-72. doi: 10.1093/nar/gkr1144.

17.

Database for bacterial group II introns.

Candales MA, Duong A, Hood KS, Li T, Neufeld RA, Sun R, McNeil BA, Wu L, Jarding AM, Zimmerly S.

Nucleic Acids Res. 2012 Jan;40(Database issue):D187-90. doi: 10.1093/nar/gkr1043.

18.

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

Ibarra-Laclette E, Albert VA, Pérez-Torres CA, Zamudio-Hernández F, Ortega-Estrada Mde J, Herrera-Estrella A, Herrera-Estrella L.

BMC Plant Biol. 2011 Jun 3;11:101. doi: 10.1186/1471-2229-11-101.

19.

Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution.

McCutcheon JP, Moran NA.

Genome Biol Evol. 2010;2:708-18. doi: 10.1093/gbe/evq055.

20.

Evolution of macromolecular import pathways in mitochondria, hydrogenosomes and mitosomes.

Lithgow T, Schneider A.

Philos Trans R Soc Lond B Biol Sci. 2010 Mar 12;365(1541):799-817. doi: 10.1098/rstb.2009.0167. Review.

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