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Prepartum body condition score and plane of nutrition affect the hepatic transcriptome during the transition period in grazing dairy cows.

Vailati-Riboni M, Meier S, Burke CR, Kay JK, Mitchell MD, Walker CG, Crookenden MA, Heiser A, Rodriguez-Zas SL, Roche JR, Loor JJ.

BMC Genomics. 2016 Nov 2;17(1):854.


Methods to increase reproducibility in differential gene expression via meta-analysis.

Sweeney TE, Haynes WA, Vallania F, Ioannidis JP, Khatri P.

Nucleic Acids Res. 2017 Jan 9;45(1):e1. doi: 10.1093/nar/gkw797. Epub 2016 Sep 14.


β-Adrenergic-stimulated macrophages: Comprehensive localization in the M1-M2 spectrum.

Lamkin DM, Ho HY, Ong TH, Kawanishi CK, Stoffers VL, Ahlawat N, Ma JC, Arevalo JM, Cole SW, Sloan EK.

Brain Behav Immun. 2016 Oct;57:338-46. doi: 10.1016/j.bbi.2016.07.162. Epub 2016 Jul 30.


Accumulation of Extracellular Matrix in Advanced Lesions of Canine Distemper Demyelinating Encephalitis.

Seehusen F, Al-Azreg SA, Raddatz BB, Haist V, Puff C, Spitzbarth I, Ulrich R, Baumgärtner W.

PLoS One. 2016 Jul 21;11(7):e0159752. doi: 10.1371/journal.pone.0159752. eCollection 2016.


Genome-Wide Profiling of RNA from Dried Blood Spots: Convergence with Bioinformatic Results Derived from Whole Venous Blood and Peripheral Blood Mononuclear Cells.

McDade TW, M Ross K, L Fried R, Arevalo JM, Ma J, Miller GE, Cole SW.

Biodemography Soc Biol. 2016;62(2):182-97. doi: 10.1080/19485565.2016.1185600.


TLR4 signaling in VTA dopaminergic neurons regulates impulsivity through tyrosine hydroxylase modulation.

Aurelian L, Warnock KT, Balan I, Puche A, June H.

Transl Psychiatry. 2016 May 17;6:e815. doi: 10.1038/tp.2016.72.


Meta-analysis of transcriptomic responses as a means to identify pulmonary disease outcomes for engineered nanomaterials.

Nikota J, Williams A, Yauk CL, Wallin H, Vogel U, Halappanavar S.

Part Fibre Toxicol. 2016 May 11;13(1):25. doi: 10.1186/s12989-016-0137-5.


Gain-of-function miRNA signature by mutant p53 associates with poor cancer outcome.

Zhang Y, Hu Y, Fang JY, Xu J.

Oncotarget. 2016 Mar 8;7(10):11056-66. doi: 10.18632/oncotarget.7090.


A common molecular signature in ASD gene expression: following Root 66 to autism.

Diaz-Beltran L, Esteban FJ, Wall DP.

Transl Psychiatry. 2016 Jan 5;6:e705. doi: 10.1038/tp.2015.112. Review.


Weaning Markedly Affects Transcriptome Profiles and Peyer's Patch Development in Piglet Ileum.

Inoue R, Tsukahara T, Nakatani M, Okutani M, Nishibayashi R, Ogawa S, Harayama T, Nagino T, Hatanaka H, Fukuta K, Romero-Pérez GA, Ushida K, Kelly D.

Front Immunol. 2015 Dec 15;6:630. doi: 10.3389/fimmu.2015.00630. eCollection 2015.


Comparison of Gene Expression by Sheep and Human Blood Stimulated with the TLR4 Agonists Lipopolysaccharide and Monophosphoryl Lipid A.

Enkhbaatar P, Nelson C, Salsbury JR, Carmical JR, Torres KE, Herndon D, Prough DS, Luan L, Sherwood ER.

PLoS One. 2015 Dec 7;10(12):e0144345. doi: 10.1371/journal.pone.0144345. eCollection 2015.


Comparing gene expression data from formalin-fixed, paraffin embedded tissues and qPCR with that from snap-frozen tissue and microarrays for modeling outcomes of patients with ovarian carcinoma.

Bradley WH, Eng K, Le M, Mackinnon AC, Kendziorski C, Rader JS.

BMC Clin Pathol. 2015 Sep 24;15:17. doi: 10.1186/s12907-015-0017-1. eCollection 2015.


Potential Adverse Effects of Prolonged Sevoflurane Exposure on Developing Monkey Brain: From Abnormal Lipid Metabolism to Neuronal Damage.

Liu F, Rainosek SW, Frisch-Daiello JL, Patterson TA, Paule MG, Slikker W Jr, Wang C, Han X.

Toxicol Sci. 2015 Oct;147(2):562-72. doi: 10.1093/toxsci/kfv150. Epub 2015 Jul 23.


Identification of reproducible drug-resistance-related dysregulated genes in small-scale cancer cell line experiments.

Ao L, Yan H, Zheng T, Wang H, Tong M, Guan Q, Li X, Cai H, Li M, Guo Z.

Sci Rep. 2015 Jul 15;5:11895. doi: 10.1038/srep11895.


Reversal of the Transcriptome by Prostaglandin E2 during Myofibroblast Dedifferentiation.

Wettlaufer SH, Scott JP, McEachin RC, Peters-Golden M, Huang SK.

Am J Respir Cell Mol Biol. 2016 Jan;54(1):114-27. doi: 10.1165/rcmb.2014-0468OC.


Transcriptional Profiling of Hydrogen Production Metabolism of Rhodobacter capsulatus under Temperature Stress by Microarray Analysis.

Gürgan M, Erkal NA, Özgür E, Gündüz U, Eroglu I, Yücel M.

Int J Mol Sci. 2015 Jun 16;16(6):13781-97. doi: 10.3390/ijms160613781.


Urokinase-type plasminogen activator resulting from endometrial carcinogenesis enhances tumor invasion and correlates with poor outcome of endometrial carcinoma patients.

Huang CY, Chang MC, Huang WY, Huang CT, Tang YC, Huang HD, Kuo KT, Chen CA, Cheng WF.

Sci Rep. 2015 Jun 2;5:10680. doi: 10.1038/srep10680.


Transcriptomic profiles differentiate normal rectal epithelium and adenocarcinoma.

Hogan J, Dejulius K, Liu X, Coffey JC, Kalady MF.

Int Surg. 2015 May;100(5):818-26. doi: 10.9738/INTSURG-D-14-00272.1.


A comprehensive collection of systems biology data characterizing the host response to viral infection.

Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A 3rd, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, Fan S, Ferris MT, Gralinski LE, Green RR, Gritsenko MA, Hatta M, Heegel RA, Jacobs JM, Jeng S, Josset L, Kaiser SM, Kelly S, Law GL, Li C, Li J, Long C, Luna ML, Matzke M, McDermott J, Menachery V, Metz TO, Mitchell H, Monroe ME, Navarro G, Neumann G, Podyminogin RL, Purvine SO, Rosenberger CM, Sanders CJ, Schepmoes AA, Shukla AK, Sims A, Sova P, Tam VC, Tchitchek N, Thomas PG, Tilton SC, Totura A, Wang J, Webb-Robertson BJ, Wen J, Weiss JM, Yang F, Yount B, Zhang Q, McWeeney S, Smith RD, Waters KM, Kawaoka Y, Baric R, Aderem A, Katze MG, Scheuermann RH.

Sci Data. 2014 Oct 14;1:140033. doi: 10.1038/sdata.2014.33. eCollection 2014.


Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns.

Riedmann C, Ma Y, Melikishvili M, Godfrey SG, Zhang Z, Chen KC, Rouchka EC, Fondufe-Mittendorf YN.

BMC Genomics. 2015 Mar 19;16:212. doi: 10.1186/s12864-015-1295-9.

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