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Items: 1 to 20 of 26


Keeping It All Going-Complement Meets Metabolism.

Kolev M, Kemper C.

Front Immunol. 2017 Jan 18;8:1. doi: 10.3389/fimmu.2017.00001. eCollection 2017 Jan 18. Review.


Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes.

Cruz-Morales P, Kopp JF, Martínez-Guerrero C, Yáñez-Guerra LA, Selem-Mojica N, Ramos-Aboites H, Feldmann J, Barona-Gómez F.

Genome Biol Evol. 2016 Jul 2;8(6):1906-16. doi: 10.1093/gbe/evw125.


The early history and emergence of molecular functions and modular scale-free network behavior.

Aziz MF, Caetano-Anollés K, Caetano-Anollés G.

Sci Rep. 2016 Apr 28;6:25058. doi: 10.1038/srep25058.


Computing the origin and evolution of the ribosome from its structure - Uncovering processes of macromolecular accretion benefiting synthetic biology.

Caetano-Anollés G, Caetano-Anollés D.

Comput Struct Biotechnol J. 2015 Jul 26;13:427-47. doi: 10.1016/j.csbj.2015.07.003. eCollection 2015 Jul 26. Review.


Systems biology of the structural proteome.

Brunk E, Mih N, Monk J, Zhang Z, O'Brien EJ, Bliven SE, Chen K, Chang RL, Bourne PE, Palsson BO.

BMC Syst Biol. 2016 Mar 11;10:26. doi: 10.1186/s12918-016-0271-6.


A model for genesis of transcription systems.

Burton ZF, Opron K, Wei G, Geiger JH.

Transcription. 2016;7(1):1-13. doi: 10.1080/21541264.2015.1128518.


The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism.

Goldman AD, Beatty JT, Landweber LF.

J Mol Evol. 2016 Jan;82(1):17-26. doi: 10.1007/s00239-015-9722-8. Epub 2016 Jan 5.


The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria.

Poot-Hernandez AC, Rodriguez-Vazquez K, Perez-Rueda E.

BMC Genomics. 2015 Nov 17;16:957. doi: 10.1186/s12864-015-2113-0.


Nucleotide binding database NBDB--a collection of sequence motifs with specific protein-ligand interactions.

Zheng Z, Goncearenco A, Berezovsky IN.

Nucleic Acids Res. 2016 Jan 4;44(D1):D301-7. doi: 10.1093/nar/gkv1124. Epub 2015 Oct 26.


Self-establishing communities enable cooperative metabolite exchange in a eukaryote.

Campbell K, Vowinckel J, Mülleder M, Malmsheimer S, Lawrence N, Calvani E, Miller-Fleming L, Alam MT, Christen S, Keller MA, Ralser M.

Elife. 2015 Oct 26;4. pii: e09943. doi: 10.7554/eLife.09943.


Metabolic Regulation of a Bacterial Cell System with Emphasis on Escherichia coli Metabolism.

Shimizu K.

ISRN Biochem. 2013 Feb 18;2013:645983. doi: 10.1155/2013/645983. eCollection 2013 Feb 18. Review.


The origin and evolution of ribonucleotide reduction.

Lundin D, Berggren G, Logan DT, Sjöberg BM.

Life (Basel). 2015 Feb 27;5(1):604-36. doi: 10.3390/life5010604. Review.


Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life.

Armenta-Medina D, Segovia L, Perez-Rueda E.

BMC Genomics. 2014 Sep 17;15:800. doi: 10.1186/1471-2164-15-800.


Enzyme recruitment and its role in metabolic expansion.

Schulenburg C, Miller BG.

Biochemistry. 2014 Feb 11;53(5):836-45. doi: 10.1021/bi401667f. Epub 2014 Jan 31. Review.


Structural phylogenomics reveals gradual evolutionary replacement of abiotic chemistries by protein enzymes in purine metabolism.

Caetano-Anollés K, Caetano-Anollés G.

PLoS One. 2013;8(3):e59300. doi: 10.1371/journal.pone.0059300. Epub 2013 Mar 13.


Evolution of domain architectures and catalytic functions of enzymes in metabolic systems.

Suen S, Lu HH, Yeang CH.

Genome Biol Evol. 2012;4(9):976-93. doi: 10.1093/gbe/evs072. Epub 2012 Aug 30.


Biphasic patterns of diversification and the emergence of modules.

Mittenthal J, Caetano-Anollés D, Caetano-Anollés G.

Front Genet. 2012 Aug 7;3:147. doi: 10.3389/fgene.2012.00147. eCollection 2012 Aug 7.


A quantitative analysis of monochromaticity in genetic interaction networks.

Hsu CH, Wang TY, Chu HT, Kao CY, Chen KC.

BMC Bioinformatics. 2011;12 Suppl 13:S16. doi: 10.1186/1471-2105-12-S13-S16. Epub 2011 Nov 30.


Evolutionary significance of metabolic network properties.

Basler G, Grimbs S, Ebenhöh O, Selbig J, Nikoloski Z.

J R Soc Interface. 2012 Jun 7;9(71):1168-76. doi: 10.1098/rsif.2011.0652. Epub 2011 Nov 30.

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