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Whole Genome Sequencing of Enterovirus species C Isolates by High-Throughput Sequencing: Development of Generic Primers.

Bessaud M, Sadeuh-Mba SA, Joffret ML, Razafindratsimandresy R, Polston P, Volle R, Rakoto-Andrianarivelo M, Blondel B, Njouom R, Delpeyroux F.

Front Microbiol. 2016 Aug 26;7:1294. doi: 10.3389/fmicb.2016.01294.


Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data.

Berthet N, Descorps-Declère S, Nkili-Meyong AA, Nakouné E, Gessain A, Manuguerra JC, Kazanji M.

Biol Res. 2016 Sep 7;49(1):39. doi: 10.1186/s40659-016-0099-y.


Sequence-independent amplification coupled with DNA microarray analysis for detection and genotyping of noroviruses.

Hu Y, Yan H, Mammel M, Chen H.

AMB Express. 2015 Dec;5(1):69. doi: 10.1186/s13568-015-0156-x.


Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes.

Temmam S, Monteil-Bouchard S, Robert C, Pascalis H, Michelle C, Jardot P, Charrel R, Raoult D, Desnues C.

PLoS One. 2015 Oct 2;10(10):e0139810. doi: 10.1371/journal.pone.0139810.


First Detection of an Enterovirus C99 in a Captive Chimpanzee with Acute Flaccid Paralysis, from the Tchimpounga Chimpanzee Rehabilitation Center, Republic of Congo.

Mombo IM, Berthet N, Lukashev AN, Bleicker T, Brünink S, Léger L, Atencia R, Cox D, Bouchier C, Durand P, Arnathau C, Brazier L, Fair JN, Schneider BS, Drexler JF, Prugnolle F, Drosten C, Renaud F, Leroy EM, Rougeron V.

PLoS One. 2015 Aug 24;10(8):e0136700. doi: 10.1371/journal.pone.0136700.


Complete genome sequence of mumps virus genotype g from a vaccinated child in franceville, southeastern Gabon, in 2013.

Maganga GD, Iroungou BA, Bole-Feysot C, Leroy EM, Touré Ndouo FS, Berthet N.

Genome Announc. 2014 Nov 26;2(6). pii: e00972-14. doi: 10.1128/genomeA.00972-14.


Complete genome sequences of two middelburg viruses isolated from arthropods in the central african republic.

Tricou V, Berthet N, Descorps-Declere S, Nakouné E, Kazanji M.

Genome Announc. 2014 Oct 23;2(5). pii: e01078-14. doi: 10.1128/genomeA.01078-14.


Combination of an unbiased amplification method and a resequencing microarray for detecting and genotyping equine arteritis virus.

Hans A, Gaudaire D, Manuguerra JC, Leon A, Gessain A, Laugier C, Berthet N, Zientara S.

J Clin Microbiol. 2015 Jan;53(1):287-91. doi: 10.1128/JCM.01935-14.


Characterization of a genogroup I sapovirus isolated from chimpanzees in the republic of congo.

Mombo IM, Berthet N, Bouchier C, Fair JN, Schneider BS, Renaud F, Leroy EM, Rougeron V.

Genome Announc. 2014 Jul 17;2(4). pii: e00680-14. doi: 10.1128/genomeA.00680-14.


The microbial detection array for detection of emerging viruses in clinical samples--a useful panmicrobial diagnostic tool.

Rosenstierne MW, McLoughlin KS, Olesen ML, Papa A, Gardner SN, Engler O, Plumet S, Mirazimi A, Weidmann M, Niedrig M, Fomsgaard A, Erlandsson L.

PLoS One. 2014 Jun 25;9(6):e100813. doi: 10.1371/journal.pone.0100813.


Complete genome sequence of a rabies virus isolated from a human in central african republic.

Tricou V, Berthet N, Nakouné E, Kazanji M.

Genome Announc. 2014 Jun 19;2(3). pii: e00598-14. doi: 10.1128/genomeA.00598-14.


Application of high-density DNA resequencing microarray for detection and characterization of botulinum neurotoxin-producing clostridia.

Vanhomwegen J, Berthet N, Mazuet C, Guigon G, Vallaeys T, Stamboliyska R, Dubois P, Kennedy GC, Cole ST, Caro V, Manuguerra JC, Popoff MR.

PLoS One. 2013 Jun 20;8(6):e67510. doi: 10.1371/journal.pone.0067510.


A fosmid cloning strategy for detecting the widest possible spectrum of microbes from the international space station drinking water system.

Choi S, Chang MS, Stuecker T, Chung C, Newcombe DA, Venkateswaran K.

Genomics Inform. 2012 Dec;10(4):249-55. doi: 10.5808/GI.2012.10.4.249. Retraction in: Genomics Inform. 2013 Jun;11(2):97.


Molecular diagnostic and genetic characterization of highly pathogenic viruses: application during Crimean-Congo haemorrhagic fever virus outbreaks in Eastern Europe and the Middle East.

Filippone C, Marianneau P, Murri S, Mollard N, Avsic-Zupanc T, Chinikar S, Desprès P, Caro V, Gessain A, Berthet N, Tordo N.

Clin Microbiol Infect. 2013 Feb;19(2):E118-28. doi: 10.1111/1469-0691.12075.


Differentiation of the seven major lyssavirus species by oligonucleotide microarray.

Xi J, Guo H, Feng Y, Xu Y, Shao M, Su N, Wan J, Li J, Tu C.

J Clin Microbiol. 2012 Mar;50(3):619-25. doi: 10.1128/JCM.00848-11.


From orphan virus to pathogen: the path to the clinical lab.

Li L, Delwart E.

Curr Opin Virol. 2011 Oct;1(4):282-8. doi: 10.1016/j.coviro.2011.07.006. Review.


The microbial detection array combined with random Phi29-amplification used as a diagnostic tool for virus detection in clinical samples.

Erlandsson L, Rosenstierne MW, McLoughlin K, Jaing C, Fomsgaard A.

PLoS One. 2011;6(8):e22631. doi: 10.1371/journal.pone.0022631.


Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.

Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M.

J Clin Microbiol. 2011 Sep;49(9):3268-75. doi: 10.1128/JCM.00850-11.


Detection and identification of common food-borne viruses with a tiling microarray.

Chen H, Mammel M, Kulka M, Patel I, Jackson S, Goswami BB.

Open Virol J. 2011;5:52-9. doi: 10.2174/1874357901105010052.

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