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Items: 20


CASP 11 target classification.

Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV.

Proteins. 2016 Sep;84 Suppl 1:20-33. doi: 10.1002/prot.24982.


Characteristics of equipartition for RNA structure.

Li H, Zhu D, Zhang C, Han H, Crandall KA.

BMC Proc. 2014 Oct 13;8(Suppl 6 Proceedings of the Great Lakes Bioinformatics Confer):S3. doi: 10.1186/1753-6561-8-S6-S3.


Characteristics and prediction of RNA structure.

Li H, Zhu D, Zhang C, Han H, Crandall KA.

Biomed Res Int. 2014;2014:690340. doi: 10.1155/2014/690340.


Exploring metazoan evolution through dynamic and holistic changes in protein families and domains.

Wang Z, Zarlenga D, Martin J, Abubucker S, Mitreva M.

BMC Evol Biol. 2012 Aug 3;12:138. doi: 10.1186/1471-2148-12-138.


Evolution of the PWWP-domain encoding genes in the plant and animal lineages.

Alvarez-Venegas R, Avramova Z.

BMC Evol Biol. 2012 Jun 26;12:101.


Novel roles of the chemorepellent axon guidance molecule RGMa in cell migration and adhesion.

Lah GJ, Key B.

Mol Cell Biol. 2012 Mar;32(5):968-80. doi: 10.1128/MCB.06128-11.


Processes of fungal proteome evolution and gain of function: gene duplication and domain rearrangement.

Cohen-Gihon I, Sharan R, Nussinov R.

Phys Biol. 2011 Jun;8(3):035009. doi: 10.1088/1478-3975/8/3/035009.


DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning.

Eickholt J, Deng X, Cheng J.

BMC Bioinformatics. 2011 Feb 1;12:43. doi: 10.1186/1471-2105-12-43.


Are protein domains modules of lateral genetic transfer?

Chan CX, Darling AE, Beiko RG, Ragan MA.

PLoS One. 2009;4(2):e4524. doi: 10.1371/journal.pone.0004524.


The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.


MACHOS: Markov clusters of homologous subsequences.

Wong S, Ragan MA.

Bioinformatics. 2008 Jul 1;24(13):i77-85. doi: 10.1093/bioinformatics/btn144.


Improved general regression network for protein domain boundary prediction.

Yoo PD, Sikder AR, Zhou BB, Zomaya AY.

BMC Bioinformatics. 2008;9 Suppl 1:S12. doi: 10.1186/1471-2105-9-S1-S12.


Protein family expansions and biological complexity.

Vogel C, Chothia C.

PLoS Comput Biol. 2006 May;2(5):e48.


A trefoil domain in the major rabbit zona pellucida protein.

Bork P.

Protein Sci. 1993 Apr;2(4):669-70. No abstract available.


Modular arrangement of proteins as inferred from analysis of homology.

Sonnhammer EL, Kahn D.

Protein Sci. 1994 Mar;3(3):482-92.


Bravo/Nr-CAM is closely related to the cell adhesion molecules L1 and Ng-CAM and has a similar heterodimer structure.

Kayyem JF, Roman JM, de la Rosa EJ, Schwarz U, Dreyer WJ.

J Cell Biol. 1992 Sep;118(5):1259-70.


Proposed acquisition of an animal protein domain by bacteria.

Bork P, Doolittle RF.

Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8990-4.

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