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Items: 12

1.

Prediction of protein-protein interactions related to protein complexes based on protein interaction networks.

Liu P, Yang L, Shi D, Tang X.

Biomed Res Int. 2015;2015:259157. doi: 10.1155/2015/259157. Epub 2015 Feb 3.

2.

A highly efficient approach to protein interactome mapping based on collaborative filtering framework.

Luo X, You Z, Zhou M, Li S, Leung H, Xia Y, Zhu Q.

Sci Rep. 2015 Jan 9;5:7702. doi: 10.1038/srep07702.

3.

The role of protein interaction networks in systems biomedicine.

Sevimoglu T, Arga KY.

Comput Struct Biotechnol J. 2014 Sep 3;11(18):22-7. doi: 10.1016/j.csbj.2014.08.008. eCollection 2014 Aug. Review.

4.

Large-scale protein-protein interactions detection by integrating big biosensing data with computational model.

You ZH, Li S, Gao X, Luo X, Ji Z.

Biomed Res Int. 2014;2014:598129. doi: 10.1155/2014/598129. Epub 2014 Aug 18.

5.

t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.

Zhu L, You ZH, Huang DS, Wang B.

PLoS One. 2013;8(4):e58368. doi: 10.1371/journal.pone.0058368. Epub 2013 Apr 1.

6.

Cluster-based assessment of protein-protein interaction confidence.

Kamburov A, Grossmann A, Herwig R, Stelzl U.

BMC Bioinformatics. 2012 Oct 10;13:262. doi: 10.1186/1471-2105-13-262.

7.

IntScore: a web tool for confidence scoring of biological interactions.

Kamburov A, Stelzl U, Herwig R.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W140-6. doi: 10.1093/nar/gks492. Epub 2012 May 30.

8.

Assessing and predicting protein interactions by combining manifold embedding with multiple information integration.

Lei YK, You ZH, Ji Z, Zhu L, Huang DS.

BMC Bioinformatics. 2012 May 8;13 Suppl 7:S3. doi: 10.1186/1471-2105-13-S7-S3.

9.

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.

You ZH, Lei YK, Gui J, Huang DS, Zhou X.

Bioinformatics. 2010 Nov 1;26(21):2744-51. doi: 10.1093/bioinformatics/btq510. Epub 2010 Sep 3.

10.

Antibody-array interaction mapping, a new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma.

Bergsma D, Chen S, Buchweitz J, Gerszten R, Haab BB.

Mol Cell Proteomics. 2010 Mar;9(3):446-56. doi: 10.1074/mcp.M900418-MCP200. Epub 2009 Dec 18.

11.

Geometric de-noising of protein-protein interaction networks.

Kuchaiev O, Rasajski M, Higham DJ, Przulj N.

PLoS Comput Biol. 2009 Aug;5(8):e1000454. doi: 10.1371/journal.pcbi.1000454. Epub 2009 Aug 7.

12.

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.

Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, Lotteau V, Rabourdin-Combe C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D661-8. doi: 10.1093/nar/gkn794. Epub 2008 Nov 4.

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