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Items: 16

1.

Computational design of artificial RNA molecules for gene regulation.

Laganà A, Veneziano D, Russo F, Pulvirenti A, Giugno R, Croce CM, Ferro A.

Methods Mol Biol. 2015;1269:393-412. doi: 10.1007/978-1-4939-2291-8_25.

2.

Synthetic RNAs for Gene Regulation: Design Principles and Computational Tools.

Laganà A, Shasha D, Croce CM.

Front Bioeng Biotechnol. 2014 Dec 11;2:65. doi: 10.3389/fbioe.2014.00065. eCollection 2014. Review.

3.

Induction of body weight loss through RNAi-knockdown of APOBEC1 gene expression in transgenic rabbits.

Jolivet G, Braud S, DaSilva B, Passet B, Harscoët E, Viglietta C, Gautier T, Lagrost L, Daniel-Carlier N, Houdebine LM, Harosh I.

PLoS One. 2014 Sep 12;9(9):e106655. doi: 10.1371/journal.pone.0106655. eCollection 2014.

4.

Target gene abundance contributes to the efficiency of siRNA-mediated gene silencing.

Hong SW, Jiang Y, Kim S, Li CJ, Lee DK.

Nucleic Acid Ther. 2014 Jun;24(3):192-8. doi: 10.1089/nat.2013.0466. Epub 2014 Feb 14.

5.

RNAstructure: Web servers for RNA secondary structure prediction and analysis.

Bellaousov S, Reuter JS, Seetin MG, Mathews DH.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W471-4. doi: 10.1093/nar/gkt290. Epub 2013 Apr 24.

6.

Long-range architecture in a viral RNA genome.

Archer EJ, Simpson MA, Watts NJ, O'Kane R, Wang B, Erie DA, McPherson A, Weeks KM.

Biochemistry. 2013 May 7;52(18):3182-90. doi: 10.1021/bi4001535. Epub 2013 Apr 25.

7.

Recent advances in RNA interference therapeutics for CNS diseases.

Ramachandran PS, Keiser MS, Davidson BL.

Neurotherapeutics. 2013 Jul;10(3):473-85. doi: 10.1007/s13311-013-0183-8. Review.

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10.

Action and reaction: the biological response to siRNA and its delivery vehicles.

Kanasty RL, Whitehead KA, Vegas AJ, Anderson DG.

Mol Ther. 2012 Mar;20(3):513-24. doi: 10.1038/mt.2011.294. Epub 2012 Jan 17. Review.

11.

MysiRNA-designer: a workflow for efficient siRNA design.

Mysara M, Garibaldi JM, Elhefnawi M.

PLoS One. 2011;6(10):e25642. doi: 10.1371/journal.pone.0025642. Epub 2011 Oct 26. Erratum in: PLoS One. 2015;10(3):e0119062.

13.

RNAstructure: software for RNA secondary structure prediction and analysis.

Reuter JS, Mathews DH.

BMC Bioinformatics. 2010 Mar 15;11:129. doi: 10.1186/1471-2105-11-129.

14.

Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides.

Kauffmann AD, Campagna RJ, Bartels CB, Childs-Disney JL.

Nucleic Acids Res. 2009 Oct;37(18):e121. doi: 10.1093/nar/gkp587. Epub 2009 Jul 13.

15.

Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships.

Schroeder SJ.

J Virol. 2009 Jul;83(13):6326-34. doi: 10.1128/JVI.00251-09. Epub 2009 Apr 15. Review. No abstract available.

16.

RNA secondary structure analysis using RNAstructure.

Mathews DH.

Curr Protoc Bioinformatics. 2006 Mar;Chapter 12:Unit 12.6. doi: 10.1002/0471250953.bi1206s13.

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