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Items: 1 to 20 of 210

1.

A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN.

PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017.

2.

Links between DNA methylation and nucleosome occupancy in the human genome.

Collings CK, Anderson JN.

Epigenetics Chromatin. 2017 Apr 11;10:18. doi: 10.1186/s13072-017-0125-5. eCollection 2017.

3.

DNA Sequencing Sensors: An Overview.

Garrido-Cardenas JA, Garcia-Maroto F, Alvarez-Bermejo JA, Manzano-Agugliaro F.

Sensors (Basel). 2017 Mar 14;17(3). pii: E588. doi: 10.3390/s17030588. Review.

4.

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data.

Chen Y, Zhao L, Wang Y, Cao M, Gelowani V, Xu M, Agrawal SA, Li Y, Daiger SP, Gibbs R, Wang F, Chen R.

BMC Bioinformatics. 2017 Mar 3;18(1):147. doi: 10.1186/s12859-017-1566-3.

5.

Reverse Genetics and High Throughput Sequencing Methodologies for Plant Functional Genomics.

Ben-Amar A, Daldoul S, Reustle GM, Krczal G, Mliki A.

Curr Genomics. 2016 Dec;17(6):460-475. doi: 10.2174/1389202917666160520102827.

6.

Genomes of Multicellular Organisms Have Evolved to Attract Nucleosomes to Promoter Regions.

Tompitak M, Vaillant C, Schiessel H.

Biophys J. 2017 Feb 7;112(3):505-511. doi: 10.1016/j.bpj.2016.12.041. Epub 2017 Jan 25.

PMID:
28131316
7.

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite.

Batugedara G, Lu XM, Bunnik EM, Le Roch KG.

Trends Parasitol. 2017 May;33(5):364-377. doi: 10.1016/j.pt.2016.12.004. Epub 2017 Jan 5. Review.

PMID:
28065669
8.

Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens.

Bangru S, Kalsotra A.

F1000Res. 2016 Nov 14;5:2668. eCollection 2016. Review.

9.

Sequence-specific targeting of chromatin remodelers organizes precisely positioned nucleosomes throughout the genome.

Bowman GD, McKnight JN.

Bioessays. 2017 Jan;39(1):1-8. doi: 10.1002/bies.201600183. Epub 2016 Nov 16.

PMID:
27862071
10.

Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters.

Dreos R, Ambrosini G, Bucher P.

PLoS Comput Biol. 2016 Oct 7;12(10):e1005144. doi: 10.1371/journal.pcbi.1005144. eCollection 2016 Oct.

11.

Evidence of selection for an accessible nucleosomal array in human.

Drillon G, Audit B, Argoul F, Arneodo A.

BMC Genomics. 2016 Jul 29;17:526. doi: 10.1186/s12864-016-2880-2.

12.

Nucleosome Positioning.

Nishida H.

ISRN Mol Biol. 2012 Oct 15;2012:245706. doi: 10.5402/2012/245706. eCollection 2012. Review.

13.

Challenges of Identifying Clinically Actionable Genetic Variants for Precision Medicine.

Carter TC, He MM.

J Healthc Eng. 2016;2016. doi: 10.1155/2016/3617572.

14.

An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.

Li J, Batcha AM, Grüning B, Mansmann UR.

Cancer Inform. 2016 Apr 10;14(Suppl 5):87-107. doi: 10.4137/CIN.S30793. eCollection 2015. Review.

15.

A deformation energy-based model for predicting nucleosome dyads and occupancy.

Liu G, Xing Y, Zhao H, Wang J, Shang Y, Cai L.

Sci Rep. 2016 Apr 7;6:24133. doi: 10.1038/srep24133.

16.

Chromatin structure and pre-mRNA processing work together.

Jimeno-González S, Reyes JC.

Transcription. 2016 May 26;7(3):63-8. doi: 10.1080/21541264.2016.1168507. Epub 2016 Mar 30.

17.

Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation.

Ivanov M, Baranova A, Butler T, Spellman P, Mileyko V.

BMC Genomics. 2015;16 Suppl 13:S1. doi: 10.1186/1471-2164-16-S13-S1. Epub 2015 Dec 16.

18.

Construction of a high-density mutant library in soybean and development of a mutant retrieval method using amplicon sequencing.

Tsuda M, Kaga A, Anai T, Shimizu T, Sayama T, Takagi K, Machita K, Watanabe S, Nishimura M, Yamada N, Mori S, Sasaki H, Kanamori H, Katayose Y, Ishimoto M.

BMC Genomics. 2015 Nov 26;16:1014. doi: 10.1186/s12864-015-2079-y.

19.

Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum.

Lu XM, Bunnik EM, Pokhriyal N, Nasseri S, Lonardi S, Le Roch KG.

BMC Genomics. 2015 Nov 25;16:1005. doi: 10.1186/s12864-015-2214-9.

20.

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.

Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.

BMC Genomics. 2015 Nov 19;16:978. doi: 10.1186/s12864-015-2198-5.

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