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Items: 19

1.

The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats.

van der Weide RH, Simonis M, Hermsen R, Toonen P, Cuppen E, de Ligt J.

PLoS One. 2016 Aug 8;11(8):e0160036. doi: 10.1371/journal.pone.0160036. eCollection 2016.

2.

Dietary soy and meat proteins induce distinct physiological and gene expression changes in rats.

Song S, Hooiveld GJ, Li M, Zhao F, Zhang W, Xu X, Muller M, Li C, Zhou G.

Sci Rep. 2016 Feb 9;6:20036. doi: 10.1038/srep20036.

3.

RNA-Seq profiling reveals novel hepatic gene expression pattern in aflatoxin B1 treated rats.

Merrick BA, Phadke DP, Auerbach SS, Mav D, Stiegelmeyer SM, Shah RR, Tice RR.

PLoS One. 2013 Apr 22;8(4):e61768. doi: 10.1371/journal.pone.0061768. Print 2013.

4.

Exploring genetic, genomic, and phenotypic data at the rat genome database.

Laulederkind SJ, Hayman GT, Wang SJ, Lowry TF, Nigam R, Petri V, Smith JR, Dwinell MR, Jacob HJ, Shimoyama M.

Curr Protoc Bioinformatics. 2012 Dec;Chapter 1:Unit1.14. doi: 10.1002/0471250953.bi0114s40.

6.

Phenotypic and gene expression differences between DA, BN and WOKW rats.

Lange J, Barz T, Ekkernkamp A, Wilke B, Klöting I, Follak N.

PLoS One. 2012;7(6):e38981. doi: 10.1371/journal.pone.0038981. Epub 2012 Jun 29.

7.

Expression of miRNAs and their cooperative regulation of the pathophysiology in traumatic brain injury.

Hu Z, Yu D, Almeida-Suhett C, Tu K, Marini AM, Eiden L, Braga MF, Zhu J, Li Z.

PLoS One. 2012;7(6):e39357. doi: 10.1371/journal.pone.0039357. Epub 2012 Jun 22.

8.

Strategies and methods to study sex differences in cardiovascular structure and function: a guide for basic scientists.

Miller VM, Kaplan JR, Schork NJ, Ouyang P, Berga SL, Wenger NK, Shaw LJ, Webb RC, Mallampalli M, Steiner M, Taylor DA, Merz CN, Reckelhoff JF.

Biol Sex Differ. 2011 Dec 12;2:14. doi: 10.1186/2042-6410-2-14.

9.

The emerging role for rat models in gene discovery.

Dwinell MR, Lazar J, Geurts AM.

Mamm Genome. 2011 Aug;22(7-8):466-75. doi: 10.1007/s00335-011-9346-2. Epub 2011 Jul 6. Review.

10.

Body fat distribution and organ weights of 14 common strains and a 22-strain consomic panel of rats.

Reed DR, Duke FF, Ellis HK, Rosazza MR, Lawler MP, Alarcon LK, Tordoff MG.

Physiol Behav. 2011 Jul 6;103(5):523-9. doi: 10.1016/j.physbeh.2011.04.006. Epub 2011 Apr 15.

11.

Genome-wide computational analysis of dioxin response element location and distribution in the human, mouse, and rat genomes.

Dere E, Forgacs AL, Zacharewski TR, Burgoon LD.

Chem Res Toxicol. 2011 Apr 18;24(4):494-504. doi: 10.1021/tx100328r. Epub 2011 Mar 17.

12.

Expression profiling of major histocompatibility and natural killer complex genes reveals candidates for controlling risk of graft versus host disease.

Novota P, Zinöcker S, Norden J, Wang XN, Sviland L, Opitz L, Salinas-Riester G, Rolstad B, Dickinson AM, Walter L, Dressel R.

PLoS One. 2011 Jan 28;6(1):e16582. doi: 10.1371/journal.pone.0016582.

13.

Taste solution consumption by FHH-Chr nBN consomic rats.

Tordoff MG.

Chem Senses. 2010 Jul;35(6):473-89. doi: 10.1093/chemse/bjq038. Epub 2010 May 16.

14.

Organization of the variable region of the immunoglobulin heavy-chain gene locus of the rat.

Hendricks J, Terpstra P, Dammers PM, Somasundaram R, Visser A, Stoel M, Bos NA, Kroese FG.

Immunogenetics. 2010 Jul;62(7):479-86. doi: 10.1007/s00251-010-0448-x. Epub 2010 May 5.

15.

Recent advances in genetics of the spontaneously hypertensive rat.

Pravenec M, Kurtz TW.

Curr Hypertens Rep. 2010 Feb;12(1):5-9. doi: 10.1007/s11906-009-0083-9. Review.

16.

Clustering of large cell populations: method and application to the basal forebrain cholinergic system.

Nadasdy Z, Varsanyi P, Zaborszky L.

J Neurosci Methods. 2010 Dec 15;194(1):46-55. doi: 10.1016/j.jneumeth.2010.04.008. Epub 2010 Apr 14.

17.

Ensembl 2009.

Hubbard TJ, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Graf S, Haider S, Hammond M, Holland R, Howe K, Jenkinson A, Johnson N, Kahari A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Rios D, Schuster M, Slater G, Smedley D, Spooner W, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wilder S, Zadissa A, Birney E, Cunningham F, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Kasprzyk A, Proctor G, Smith J, Searle S, Flicek P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D690-7. doi: 10.1093/nar/gkn828. Epub 2008 Nov 25.

18.

The Rat Genome Database 2009: variation, ontologies and pathways.

Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team..

Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. doi: 10.1093/nar/gkn842. Epub 2008 Nov 7.

19.

The role of CLCA proteins in inflammatory airway disease.

Patel AC, Brett TJ, Holtzman MJ.

Annu Rev Physiol. 2009;71:425-49. doi: 10.1146/annurev.physiol.010908.163253. Review.

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