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Items: 1 to 20 of 23

1.
2.

Automated analysis of immunohistochemistry images identifies candidate location biomarkers for cancers.

Kumar A, Rao A, Bhavani S, Newberg JY, Murphy RF.

Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):18249-54. doi: 10.1073/pnas.1415120112. Epub 2014 Dec 8.

3.

Genomic and genetic variation in E2F transcription factor-1 in men with nonobstructive azoospermia.

Jorgez CJ, Wilken N, Addai JB, Newberg J, Vangapandu HV, Pastuszak AW, Mukherjee S, Rosenfeld JA, Lipshultz LI, Lamb DJ.

Fertil Steril. 2015 Jan;103(1):44-52.e1. doi: 10.1016/j.fertnstert.2014.09.021. Epub 2014 Oct 24.

4.

Bioimaging-based detection of mislocalized proteins in human cancers by semi-supervised learning.

Xu YY, Yang F, Zhang Y, Shen HB.

Bioinformatics. 2015 Apr 1;31(7):1111-9. doi: 10.1093/bioinformatics/btu772. Epub 2014 Nov 19.

5.

Many local pattern texture features: which is better for image-based multilabel human protein subcellular localization classification?

Yang F, Xu YY, Shen HB.

ScientificWorldJournal. 2014;2014:429049. doi: 10.1155/2014/429049. Epub 2014 Jun 24.

6.

Determining the subcellular location of new proteins from microscope images using local features.

Coelho LP, Kangas JD, Naik AW, Osuna-Highley E, Glory-Afshar E, Fuhrman M, Simha R, Berget PB, Jarvik JW, Murphy RF.

Bioinformatics. 2013 Sep 15;29(18):2343-9. doi: 10.1093/bioinformatics/btt392. Epub 2013 Jul 8.

7.

Automated classification of immunostaining patterns in breast tissue from the human protein atlas.

Swamidoss IN, Kårsnäs A, Uhlmann V, Ponnusamy P, Kampf C, Simonsson M, Wählby C, Strand R.

J Pathol Inform. 2013 Mar 30;4(Suppl):S14. doi: 10.4103/2153-3539.109881. Print 2013.

8.

An image-based multi-label human protein subcellular localization predictor (iLocator) reveals protein mislocalizations in cancer tissues.

Xu YY, Yang F, Zhang Y, Shen HB.

Bioinformatics. 2013 Aug 15;29(16):2032-40. doi: 10.1093/bioinformatics/btt320. Epub 2013 Jun 4.

9.

Automated analysis and reannotation of subcellular locations in confocal images from the Human Protein Atlas.

Li J, Newberg JY, Uhlén M, Lundberg E, Murphy RF.

PLoS One. 2012;7(11):e50514. doi: 10.1371/journal.pone.0050514. Epub 2012 Nov 30.

10.

Toward the virtual cell: automated approaches to building models of subcellular organization "learned" from microscopy images.

Buck TE, Li J, Rohde GK, Murphy RF.

Bioessays. 2012 Sep;34(9):791-9. doi: 10.1002/bies.201200032. Epub 2012 Jul 10. Review.

11.

Automated microscopy and image analysis for androgen receptor function.

Hartig SM, Newberg JY, Bolt MJ, Szafran AT, Marcelli M, Mancini MA.

Methods Mol Biol. 2011;776:313-31. doi: 10.1007/978-1-61779-243-4_18.

12.

A Graphical Model to Determine the Subcellular Protein Location in Artificial Tissues.

Glory-Afshar E, Osuna-Highley E, Granger B, Murphy RF.

Proc IEEE Int Symp Biomed Imaging. 2010 Apr;2010:1037-1040.

13.

Phenotype recognition with combined features and random subspace classifier ensemble.

Zhang B, Pham TD.

BMC Bioinformatics. 2011 Apr 30;12:128. doi: 10.1186/1471-2105-12-128.

14.

Histopathological image analysis: a review.

Gurcan MN, Boucheron LE, Can A, Madabhushi A, Rajpoot NM, Yener B.

IEEE Rev Biomed Eng. 2009;2:147-71. doi: 10.1109/RBME.2009.2034865. Epub 2009 Oct 30. Review.

15.

Probabilistic analysis of gene expression measurements from heterogeneous tissues.

Erkkilä T, Lehmusvaara S, Ruusuvuori P, Visakorpi T, Shmulevich I, Lähdesmäki H.

Bioinformatics. 2010 Oct 15;26(20):2571-7. doi: 10.1093/bioinformatics/btq406. Epub 2010 Jul 14.

16.

AUTOMATED COMPARISON OF PROTEIN SUBCELLULAR LOCATION PATTERNS BETWEEN IMAGES OF NORMAL AND CANCEROUS TISSUES.

Glory E, Newberg J, Murphy RF.

Proc IEEE Int Symp Biomed Imaging. 2008;4540993:304-307.

17.

Automated Proteome-Wide Determination of Subcellular Location Using High Throughput Microscopy.

Murphy RF.

Proc IEEE Int Symp Biomed Imaging. 2008 May 14;2008:308-311.

18.

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images.

Riffle M, Davis TN.

BMC Bioinformatics. 2010 May 19;11:263. doi: 10.1186/1471-2105-11-263.

19.

Visualization of image data from cells to organisms.

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK.

Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Review.

20.

Development of an automatic quantification method for cancer tissue microarray study.

Sanders TH, Stokes TH, Moffitt RA, Chaudry Q, Parry R, Wang MD.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:3665-8. doi: 10.1109/IEMBS.2009.5334528.

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