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Items: 1 to 20 of 198


The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally.

García-Molinero V, García-Martínez J, Reja R, Furió-Tarí P, Antúnez O, Vinayachandran V, Conesa A, Pugh BF, Pérez-Ortín JE, Rodríguez-Navarro S.

Epigenetics Chromatin. 2018 Mar 29;11(1):13. doi: 10.1186/s13072-018-0184-2.


Current Insights into Oral Cancer Epigenetics.

Irimie AI, Ciocan C, Gulei D, Mehterov N, Atanasov AG, Dudea D, Berindan-Neagoe I.

Int J Mol Sci. 2018 Feb 27;19(3). pii: E670. doi: 10.3390/ijms19030670. Review.


Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock.

Vinayachandran V, Reja R, Rossi MJ, Park B, Rieber L, Mittal C, Mahony S, Pugh BF.

Genome Res. 2018 Feb 14. doi: 10.1101/gr.226761.117. [Epub ahead of print]


Precise genome-wide mapping of single nucleosomes and linkers in vivo.

Chereji RV, Ramachandran S, Bryson TD, Henikoff S.

Genome Biol. 2018 Feb 9;19(1):19. doi: 10.1186/s13059-018-1398-0.


Exploring the Link between Nucleosome Occupancy and DNA Methylation.

Lövkvist C, Sneppen K, Haerter JO.

Front Genet. 2018 Jan 12;8:232. doi: 10.3389/fgene.2017.00232. eCollection 2017.


Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression.

Zhang Q, Oh DH, DiTusa SF, RamanaRao MV, Baisakh N, Dassanayake M, Smith AP.

BMC Genomics. 2018 Jan 26;19(1):97. doi: 10.1186/s12864-017-4397-8.


Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans.

Jovic K, Sterken MG, Grilli J, Bevers RPJ, Rodriguez M, Riksen JAG, Allesina S, Kammenga JE, Snoek LB.

PLoS One. 2017 Dec 11;12(12):e0189445. doi: 10.1371/journal.pone.0189445. eCollection 2017.


The coupled effect of nucleosome organization on gene transcription level and transcriptional plasticity.

Chen J, Li E, Lai J.

Nucleus. 2017 Nov 2;8(6):605-612. doi: 10.1080/19491034.2017.1402152.


NicE-seq: high resolution open chromatin profiling.

Ponnaluri VKC, Zhang G, Estève PO, Spracklin G, Sian S, Xu SY, Benoukraf T, Pradhan S.

Genome Biol. 2017 Jun 28;18(1):122. doi: 10.1186/s13059-017-1247-6.


Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes.

van den Berg AA, Depken M.

Nucleic Acids Res. 2017 Jul 27;45(13):7623-7632. doi: 10.1093/nar/gkx513.


A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN.

PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017.


Understanding nucleosome dynamics and their links to gene expression and DNA replication.

Lai WKM, Pugh BF.

Nat Rev Mol Cell Biol. 2017 Sep;18(9):548-562. doi: 10.1038/nrm.2017.47. Epub 2017 May 24. Review.


Nucleosome Positioning and NDR Structure at RNA Polymerase III Promoters.

Helbo AS, Lay FD, Jones PA, Liang G, Grønbæk K.

Sci Rep. 2017 Feb 8;7:41947. doi: 10.1038/srep41947.


MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers.

Chereji RV, Ocampo J, Clark DJ.

Mol Cell. 2017 Feb 2;65(3):565-577.e3. doi: 10.1016/j.molcel.2016.12.009.


Genomes of Multicellular Organisms Have Evolved to Attract Nucleosomes to Promoter Regions.

Tompitak M, Vaillant C, Schiessel H.

Biophys J. 2017 Feb 7;112(3):505-511. doi: 10.1016/j.bpj.2016.12.041. Epub 2017 Jan 25.


Genomic Nucleosome Organization Reconstituted with Pure Proteins.

Krietenstein N, Wal M, Watanabe S, Park B, Peterson CL, Pugh BF, Korber P.

Cell. 2016 Oct 20;167(3):709-721.e12. doi: 10.1016/j.cell.2016.09.045.


Genome-wide mapping of nucleosome positions in Saccharomyces cerevisiae in response to different nitrogen conditions.

Zhang P, Du G, Zou H, Xie G, Chen J, Shi Z, Zhou J.

Sci Rep. 2016 Sep 23;6:33970. doi: 10.1038/srep33970.


A computational approach to map nucleosome positions and alternative chromatin states with base pair resolution.

Zhou X, Blocker AW, Airoldi EM, O'Shea EK.

Elife. 2016 Sep 13;5. pii: e16970. doi: 10.7554/eLife.16970.


Prediction of fine-tuned promoter activity from DNA sequence.

Siwo G, Rider A, Tan A, Pinapati R, Emrich S, Chawla N, Ferdig M.

F1000Res. 2016 Feb 11;5:158. doi: 10.12688/f1000research.7485.1. eCollection 2016.


Nucleosome Positioning.

Nishida H.

ISRN Mol Biol. 2012 Oct 15;2012:245706. doi: 10.5402/2012/245706. eCollection 2012. Review.

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