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Items: 1 to 20 of 44


Recurrent rewiring and emergence of RNA regulatory networks.

Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2816-E2825. doi: 10.1073/pnas.1617777114. Epub 2017 Mar 20.


Nop9 binds the central pseudoknot region of 18S rRNA.

Wang B, Ye K.

Nucleic Acids Res. 2017 Apr 7;45(6):3559-3567. doi: 10.1093/nar/gkw1323.


Wild-Type U2AF1 Antagonizes the Splicing Program Characteristic of U2AF1-Mutant Tumors and Is Required for Cell Survival.

Fei DL, Motowski H, Chatrikhi R, Prasad S, Yu J, Gao S, Kielkopf CL, Bradley RK, Varmus H.

PLoS Genet. 2016 Oct 24;12(10):e1006384. doi: 10.1371/journal.pgen.1006384. eCollection 2016 Oct.


Integrated analysis of RNA-binding protein complexes using in vitro selection and high-throughput sequencing and sequence specificity landscapes (SEQRS).

Lou TF, Weidmann CA, Killingsworth J, Tanaka Hall TM, Goldstrohm AC, Campbell ZT.

Methods. 2017 Apr 15;118-119:171-181. doi: 10.1016/j.ymeth.2016.10.001. Epub 2016 Oct 8. Review.


Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.

Weidmann CA, Qiu C, Arvola RM, Lou TF, Killingsworth J, Campbell ZT, Tanaka Hall TM, Goldstrohm AC.

Elife. 2016 Aug 2;5. pii: e17096. doi: 10.7554/eLife.17096.


Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins.

de Beauchene IC, de Vries SJ, Zacharias M.

Nucleic Acids Res. 2016 Jun 2;44(10):4565-80. doi: 10.1093/nar/gkw328. Epub 2016 Apr 29.


Programmable RNA-binding protein composed of repeats of a single modular unit.

Adamala KP, Martin-Alarcon DA, Boyden ES.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2579-88. doi: 10.1073/pnas.1519368113. Epub 2016 Apr 26.


De-coding and re-coding RNA recognition by PUF and PPR repeat proteins.

Hall TM.

Curr Opin Struct Biol. 2016 Feb;36:116-21. doi: 10.1016/ Epub 2016 Feb 11. Review.


Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.

Hogan GJ, Brown PO, Herschlag D.

PLoS Biol. 2015 Nov 20;13(11):e1002307. doi: 10.1371/journal.pbio.1002307. eCollection 2015.


A Nucleolar PUF RNA-binding Protein with Specificity for a Unique RNA Sequence.

Zhang C, Muench DG.

J Biol Chem. 2015 Dec 11;290(50):30108-18. doi: 10.1074/jbc.M115.691675. Epub 2015 Oct 20.


Spontaneous dominant mutations in chlamydomonas highlight ongoing evolution by gene diversification.

Boulouis A, Drapier D, Razafimanantsoa H, Wostrikoff K, Tourasse NJ, Pascal K, Girard-Bascou J, Vallon O, Wollman FA, Choquet Y.

Plant Cell. 2015 Apr;27(4):984-1001. doi: 10.1105/tpc.15.00010. Epub 2015 Mar 24.


Conditional regulation of Puf1p, Puf4p, and Puf5p activity alters YHB1 mRNA stability for a rapid response to toxic nitric oxide stress in yeast.

Russo J, Olivas WM.

Mol Biol Cell. 2015 Mar 15;26(6):1015-29. doi: 10.1091/mbc.E14-10-1452. Epub 2015 Jan 28.


A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization.

Qiu C, McCann KL, Wine RN, Baserga SJ, Hall TM.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18554-9. doi: 10.1073/pnas.1407634112. Epub 2014 Dec 15.


Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.

Agrawal AA, McLaughlin KJ, Jenkins JL, Kielkopf CL.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17420-5. doi: 10.1073/pnas.1412743111. Epub 2014 Nov 24.


A protein-RNA specificity code enables targeted activation of an endogenous human transcript.

Campbell ZT, Valley CT, Wickens M.

Nat Struct Mol Biol. 2014 Aug;21(8):732-8. doi: 10.1038/nsmb.2847. Epub 2014 Jun 29.


Harnessing natural sequence variation to dissect posttranscriptional regulatory networks in yeast.

Fazlollahi M, Lee E, Muroff I, Lu XJ, Gomez-Alcala P, Causton HC, Bussemaker HJ.

G3 (Bethesda). 2014 Jun 17;4(8):1539-53. doi: 10.1534/g3.114.012039. Erratum in: G3 (Bethesda). 2014 Nov;4(11):2295.


Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function.

Miller MA, Russo J, Fischer AD, Lopez Leban FA, Olivas WM.

Nucleic Acids Res. 2014 Apr;42(6):3954-70. doi: 10.1093/nar/gkt1346. Epub 2013 Dec 25.


Engineering RNA-binding proteins for biology.

Chen Y, Varani G.

FEBS J. 2013 Aug;280(16):3734-54. doi: 10.1111/febs.12375. Epub 2013 Jul 5. Review.


Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism.

Wang Y, Wang Z, Tanaka Hall TM.

FEBS J. 2013 Aug;280(16):3755-67. doi: 10.1111/febs.12367. Epub 2013 Jun 24. Review.


A protein.protein interaction platform involved in recruitment of GLD-3 to the FBF.fem-3 mRNA complex.

Wu J, Campbell ZT, Menichelli E, Wickens M, Williamson JR.

J Mol Biol. 2013 Feb 22;425(4):738-54. doi: 10.1016/j.jmb.2012.11.013. Epub 2012 Nov 15.

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