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Items: 1 to 20 of 28

1.

Refining the Use of Linkage Disequilibrium as a Robust Signature of Selective Sweeps.

Jacobs GS, Sluckin TJ, Kivisild T.

Genetics. 2016 Aug;203(4):1807-25. doi: 10.1534/genetics.115.185900.

PMID:
27516617
2.

Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era.

Kim TS, He Q, Kim KW, Yoon MY, Ra WH, Li FP, Tong W, Yu J, Oo WH, Choi B, Heo EB, Yun BK, Kwon SJ, Kwon SW, Cho YH, Lee CY, Park BS, Park YJ.

BMC Genomics. 2016 May 26;17:408. doi: 10.1186/s12864-016-2734-y.

3.

Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation.

Racimo F.

Genetics. 2016 Feb;202(2):733-50. doi: 10.1534/genetics.115.178095. Epub 2015 Nov 23.

4.

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication.

Haasl RJ, Payseur BA.

Mol Ecol. 2016 Jan;25(1):5-23. doi: 10.1111/mec.13339. Epub 2015 Sep 16. Review.

5.

Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools.

Fuller ZL, Niño EL, Patch HM, Bedoya-Reina OC, Baumgarten T, Muli E, Mumoki F, Ratan A, McGraw J, Frazier M, Masiga D, Schuster S, Grozinger CM, Miller W.

BMC Genomics. 2015 Jul 10;16:518. doi: 10.1186/s12864-015-1712-0.

6.

SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations.

Guiblet WM, Zhao K, O'Brien SJ, Massey SE, Roca AL, Oleksyk TK.

Gigascience. 2015 Jan 14;4:1. doi: 10.1186/2047-217X-4-1. eCollection 2015.

7.

Genomic data as the "hitchhiker's guide" to cattle adaptation: tracking the milestones of past selection in the bovine genome.

Utsunomiya YT, Pérez O'Brien AM, Sonstegard TS, Sölkner J, Garcia JF.

Front Genet. 2015 Feb 10;6:36. doi: 10.3389/fgene.2015.00036. eCollection 2015. Review.

8.

The emergence of human-evolutionary medical genomics.

Crespi BJ.

Evol Appl. 2011 Mar;4(2):292-314. doi: 10.1111/j.1752-4571.2010.00156.x. Epub 2010 Oct 12.

9.

Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations.

Aslam ML, Bastiaansen JW, Megens HJ, Crooijmans RP, Nasreen F, Blomberg le A, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genet. 2014 Nov 25;15:117. doi: 10.1186/s12863-014-0117-4.

10.

Insights into the effects of long-term artificial selection on seed size in maize.

Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM.

Genetics. 2014 Sep;198(1):409-21. doi: 10.1534/genetics.114.167155. Epub 2014 Jul 17.

11.

Deciphering the genetic blueprint behind Holstein milk proteins and production.

Lee HJ, Kim J, Lee T, Son JK, Yoon HB, Baek KS, Jeong JY, Cho YM, Lee KT, Yang BC, Lim HJ, Cho K, Kim TH, Kwon EG, Nam J, Kwak W, Cho S, Kim H.

Genome Biol Evol. 2014 May 14;6(6):1366-74. doi: 10.1093/gbe/evu102.

12.

Footprints of directional selection in wild Atlantic salmon populations: evidence for parasite-driven evolution?

Zueva KJ, Lumme J, Veselov AE, Kent MP, Lien S, Primmer CR.

PLoS One. 2014 Mar 26;9(3):e91672. doi: 10.1371/journal.pone.0091672. eCollection 2014.

13.

Detecting loci under recent positive selection in dairy and beef cattle by combining different genome-wide scan methods.

Utsunomiya YT, Pérez O'Brien AM, Sonstegard TS, Van Tassell CP, do Carmo AS, Mészáros G, Sölkner J, Garcia JF.

PLoS One. 2013 May 16;8(5):e64280. doi: 10.1371/journal.pone.0064280. Print 2013.

14.

Using 50 k single nucleotide polymorphisms to elucidate genomic architecture of line 1 hereford cattle.

Huang Y, Maltecca C, Macneil MD, Alexander LJ, Snelling WM, Cassady JP.

Front Genet. 2012 Dec 14;3:285. doi: 10.3389/fgene.2012.00285. eCollection 2012.

15.

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia.

Takala-Harrison S, Clark TG, Jacob CG, Cummings MP, Miotto O, Dondorp AM, Fukuda MM, Nosten F, Noedl H, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Socheat D, Ariey F, Phyo AP, Starzengruber P, Fuehrer HP, Swoboda P, Stepniewska K, Flegg J, Arze C, Cerqueira GC, Silva JC, Ricklefs SM, Porcella SF, Stephens RM, Adams M, Kenefic LJ, Campino S, Auburn S, MacInnis B, Kwiatkowski DP, Su XZ, White NJ, Ringwald P, Plowe CV.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):240-5. doi: 10.1073/pnas.1211205110. Epub 2012 Dec 17.

16.

Evidence for selection at HIV host susceptibility genes in a West Central African human population.

Zhao K, Ishida Y, Oleksyk TK, Winkler CA, Roca AL.

BMC Evol Biol. 2012 Dec 6;12:237. doi: 10.1186/1471-2148-12-237.

17.

Uninformative polymorphisms bias genome scans for signatures of selection.

Roesti M, Salzburger W, Berner D.

BMC Evol Biol. 2012 Jun 22;12:94. doi: 10.1186/1471-2148-12-94.

18.

Evolutionary forces shaping genomic islands of population differentiation in humans.

Hofer T, Foll M, Excoffier L.

BMC Genomics. 2012 Mar 22;13:107. doi: 10.1186/1471-2164-13-107.

19.

Divergent selection and heterogeneous migration rates across the range of Sitka spruce (Picea sitchensis).

Holliday JA, Suren H, Aitken SN.

Proc Biol Sci. 2012 May 7;279(1734):1675-83. doi: 10.1098/rspb.2011.1805. Epub 2011 Nov 23.

20.

Applications and implications of neutral versus non-neutral markers in molecular ecology.

Kirk H, Freeland JR.

Int J Mol Sci. 2011;12(6):3966-88. doi: 10.3390/ijms12063966. Epub 2011 Jun 14. Review.

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