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Items: 1 to 20 of 22

1.

xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.

Duvick J, Standage DS, Merchant N, Brendel VP.

Plant Cell. 2016 Apr;28(4):840-54. doi: 10.1105/tpc.15.00933. Epub 2016 Mar 28.

2.
3.

Evolutionary Character of Alternative Splicing in Plants.

Zhang C, Yang H, Yang H.

Bioinform Biol Insights. 2016 Jan 20;9(Suppl 1):47-52. doi: 10.4137/BBI.S33716. eCollection 2015. Review.

4.

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR.

Estrada AD, Freese NH, Blakley IC, Loraine AE.

PeerJ. 2015 Apr 28;3:e919. doi: 10.7717/peerj.919. eCollection 2015.

5.

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.

Chamala S, Feng G, Chavarro C, Barbazuk WB.

Front Bioeng Biotechnol. 2015 Mar 26;3:33. doi: 10.3389/fbioe.2015.00033. eCollection 2015.

6.

Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.

Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B.

Plant Cell. 2014 Sep;26(9):3472-87. doi: 10.1105/tpc.114.130773. Epub 2014 Sep 23.

7.

Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus.

Xu P, Kong Y, Song D, Huang C, Li X, Li L.

BMC Genomics. 2014 Sep 10;15:780. doi: 10.1186/1471-2164-15-780.

8.

Comprehensive analysis of alternative splicing in Digitalis purpurea by strand-specific RNA-Seq.

Wu B, Suo F, Lei W, Gu L.

PLoS One. 2014 Aug 28;9(8):e106001. doi: 10.1371/journal.pone.0106001. eCollection 2014.

9.

Identification of novel splice variants and exons of human endothelial cell-specific chemotaxic regulator (ECSCR) by bioinformatics analysis.

Lu J, Li C, Shi C, Balducci J, Huang H, Ji HL, Chang Y, Huang Y.

Comput Biol Chem. 2012 Dec;41:41-50. doi: 10.1016/j.compbiolchem.2012.10.003. Epub 2012 Oct 23.

10.

Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide?

Boscari A, Del Giudice J, Ferrarini A, Venturini L, Zaffini AL, Delledonne M, Puppo A.

Plant Physiol. 2013 Jan;161(1):425-39. doi: 10.1104/pp.112.208538. Epub 2012 Nov 7.

11.

Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana.

Rosloski SM, Singh A, Jali SS, Balasubramanian S, Weigel D, Grbic V.

Plant Mol Biol. 2013 Jan;81(1-2):57-69. doi: 10.1007/s11103-012-9982-2. Epub 2012 Oct 31.

12.

Alternative splicing in plants--coming of age.

Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW.

Trends Plant Sci. 2012 Oct;17(10):616-23. doi: 10.1016/j.tplants.2012.06.001. Epub 2012 Jun 27. Review.

13.

Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements.

Reddy AS, Rogers MF, Richardson DN, Hamilton M, Ben-Hur A.

Front Plant Sci. 2012 Feb 7;3:18. doi: 10.3389/fpls.2012.00018. eCollection 2012.

14.

Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives.

Ahmed F, Benedito VA, Zhao PX.

Front Plant Sci. 2011 Nov 30;2:84. doi: 10.3389/fpls.2011.00084. eCollection 2011.

15.

Predicting the impact of alternative splicing on plant MADS domain protein function.

Severing EI, van Dijk AD, Morabito G, Busscher-Lange J, Immink RG, van Ham RC.

PLoS One. 2012;7(1):e30524. doi: 10.1371/journal.pone.0030524. Epub 2012 Jan 25.

16.

Intragenic alternative splicing coordination is essential for Caenorhabditis elegans slo-1 gene function.

Glauser DA, Johnson BE, Aldrich RW, Goodman MB.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20790-5. doi: 10.1073/pnas.1116712108. Epub 2011 Nov 14.

17.

Characterisation of the legume SERK-NIK gene superfamily including splice variants: implications for development and defence.

Nolan KE, Kurdyukov S, Rose RJ.

BMC Plant Biol. 2011 Mar 9;11:44. doi: 10.1186/1471-2229-11-44.

18.

Assessment of orthologous splicing isoforms in human and mouse orthologous genes.

Zambelli F, Pavesi G, Gissi C, Horner DS, Pesole G.

BMC Genomics. 2010 Oct 1;11:534. doi: 10.1186/1471-2164-11-534.

19.

Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme.

Anderson OD, Coleman-Derr D, Gu YQ, Heath S.

BMC Plant Biol. 2010 Jun 16;10:113. doi: 10.1186/1471-2229-10-113.

20.

Prevalence of alternative splicing choices in Arabidopsis thaliana.

English AC, Patel KS, Loraine AE.

BMC Plant Biol. 2010 Jun 4;10:102. doi: 10.1186/1471-2229-10-102.

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