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RNA structure in splicing: An evolutionary perspective.

Lin CL, Taggart AJ, Fairbrother WG.

RNA Biol. 2016 Sep;13(9):766-71. doi: 10.1080/15476286.2016.1208893. Epub 2016 Jul 25.


Genomic functions of U2AF in constitutive and regulated splicing.

Wu T, Fu XD.

RNA Biol. 2015;12(5):479-85. doi: 10.1080/15476286.2015.1020272.


Regulation of toll-like receptor signaling by the SF3a mRNA splicing complex.

O'Connor BP, Danhorn T, De Arras L, Flatley BR, Marcus RA, Farias-Hesson E, Leach SM, Alper S.

PLoS Genet. 2015 Feb 6;11(2):e1004932. doi: 10.1371/journal.pgen.1004932. eCollection 2015 Feb.


Mechanisms for U2AF to define 3' splice sites and regulate alternative splicing in the human genome.

Shao C, Yang B, Wu T, Huang J, Tang P, Zhou Y, Zhou J, Qiu J, Jiang L, Li H, Chen G, Sun H, Zhang Y, Denise A, Zhang DE, Fu XD.

Nat Struct Mol Biol. 2014 Nov;21(11):997-1005. doi: 10.1038/nsmb.2906. Epub 2014 Oct 19.


Intronic sequence elements impede exon ligation and trigger a discard pathway that yields functional telomerase RNA in fission yeast.

Kannan R, Hartnett S, Voelker RB, Berglund JA, Staley JP, Baumann P.

Genes Dev. 2013 Mar 15;27(6):627-38. doi: 10.1101/gad.212738.112. Epub 2013 Mar 6.


U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.

Jenkins JL, Agrawal AA, Gupta A, Green MR, Kielkopf CL.

Nucleic Acids Res. 2013 Apr 1;41(6):3859-73. doi: 10.1093/nar/gkt046. Epub 2013 Feb 1.


U2AF1 mutations in Chinese patients with acute myeloid leukemia and myelodysplastic syndrome.

Qian J, Yao DM, Lin J, Qian W, Wang CZ, Chai HY, Yang J, Li Y, Deng ZQ, Ma JC, Chen XX.

PLoS One. 2012;7(9):e45760. doi: 10.1371/journal.pone.0045760. Epub 2012 Sep 19.


The Caenorhabditis elegans gene mfap-1 encodes a nuclear protein that affects alternative splicing.

Ma L, Gao X, Luo J, Huang L, Teng Y, Horvitz HR.

PLoS Genet. 2012;8(7):e1002827. doi: 10.1371/journal.pgen.1002827. Epub 2012 Jul 19.


Triplex DNA-binding proteins are associated with clinical outcomes revealed by proteomic measurements in patients with colorectal cancer.

Nelson LD, Bender C, Mannsperger H, Buergy D, Kambakamba P, Mudduluru G, Korf U, Hughes D, Van Dyke MW, Allgayer H.

Mol Cancer. 2012 Jun 8;11:38. doi: 10.1186/1476-4598-11-38.


In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans.

Ma L, Tan Z, Teng Y, Hoersch S, Horvitz HR.

RNA. 2011 Dec;17(12):2201-11. doi: 10.1261/rna.027458.111. Epub 2011 Oct 27.


The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex.

David CJ, Boyne AR, Millhouse SR, Manley JL.

Genes Dev. 2011 May 1;25(9):972-83. doi: 10.1101/gad.2038011.


SR and SR-related proteins redistribute to segregated fibrillar components of nucleoli in a response to DNA damage.

Sakashita E, Endo H.

Nucleus. 2010 Jul-Aug;1(4):367-80. doi: 10.4161/nucl.1.4.12683. Epub 2010 Jun 16.


Genomic mRNA profiling reveals compensatory mechanisms for the requirement of the essential splicing factor U2AF.

Sridharan V, Heimiller J, Singh R.

Mol Cell Biol. 2011 Feb;31(4):652-61. doi: 10.1128/MCB.01000-10. Epub 2010 Dec 13.


Mutations in the Caenorhabditis elegans U2AF large subunit UAF-1 alter the choice of a 3' splice site in vivo.

Ma L, Horvitz HR.

PLoS Genet. 2009 Nov;5(11):e1000708. doi: 10.1371/journal.pgen.1000708. Epub 2009 Nov 6.


Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence.

Reid DC, Chang BL, Gunderson SI, Alpert L, Thompson WA, Fairbrother WG.

RNA. 2009 Dec;15(12):2385-97. doi: 10.1261/rna.1821809. Epub 2009 Oct 27.


Interactome for auxiliary splicing factor U2AF(65) suggests diverse roles.

Prigge JR, Iverson SV, Siders AM, Schmidt EE.

Biochim Biophys Acta. 2009 Jun-Aug;1789(6-8):487-92. doi: 10.1016/j.bbagrm.2009.06.002. Epub 2009 Jun 18.


Identification of motifs that function in the splicing of non-canonical introns.

Murray JI, Voelker RB, Henscheid KL, Warf MB, Berglund JA.

Genome Biol. 2008;9(6):R97. doi: 10.1186/gb-2008-9-6-r97. Epub 2008 Jun 12.


Control of pre-mRNA splicing by the general splicing factors PUF60 and U2AF(65).

Hastings ML, Allemand E, Duelli DM, Myers MP, Krainer AR.

PLoS One. 2007 Jun 20;2(6):e538.


Alternative conformations at the RNA-binding surface of the N-terminal U2AF(65) RNA recognition motif.

Thickman KR, Sickmier EA, Kielkopf CL.

J Mol Biol. 2007 Feb 23;366(3):703-10. Epub 2006 Dec 2.


In vivo requirement of the small subunit of U2AF for recognition of a weak 3' splice site.

Pacheco TR, Coelho MB, Desterro JM, Mollet I, Carmo-Fonseca M.

Mol Cell Biol. 2006 Nov;26(21):8183-90. Epub 2006 Aug 28.

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