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Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis.

Desert C, Baéza E, Aite M, Boutin M, Le Cam A, Montfort J, Houee-Bigot M, Blum Y, Roux PF, Hennequet-Antier C, Berri C, Metayer-Coustard S, Collin A, Allais S, Le Bihan E, Causeur D, Gondret F, Duclos MJ, Lagarrigue S.

BMC Genomics. 2018 Mar 7;19(1):187. doi: 10.1186/s12864-018-4520-5.


Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques.

Mazin PV, Jiang X, Fu N, Han D, Guo M, Gelfand MS, Khaitovich P.

RNA. 2018 Apr;24(4):585-596. doi: 10.1261/rna.064931.117. Epub 2018 Jan 23.


Hepatic GALE Regulates Whole-Body Glucose Homeostasis by Modulating Tff3 Expression.

Zhu Y, Zhao S, Deng Y, Gordillo R, Ghaben AL, Shao M, Zhang F, Xu P, Li Y, Cao H, Zagnitko O, Scott DA, Gupta RK, Xing C, Zhang BB, Lin HV, Scherer PE.

Diabetes. 2017 Nov;66(11):2789-2799. doi: 10.2337/db17-0323. Epub 2017 Sep 6.


Genetic Evidence of Human Adaptation to a Cooked Diet.

Carmody RN, Dannemann M, Briggs AW, Nickel B, Groopman EE, Wrangham RW, Kelso J.

Genome Biol Evol. 2016 Apr 13;8(4):1091-103. doi: 10.1093/gbe/evw059.


Age-related association of venom gene expression and diet of predatory gastropods.

Chang D, Duda TF Jr.

BMC Evol Biol. 2016 Jan 28;16:27. doi: 10.1186/s12862-016-0592-5.


Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.

Bilgin Sonay T, Carvalho T, Robinson MD, Greminger MP, Krützen M, Comas D, Highnam G, Mittelman D, Sharp A, Marques-Bonet T, Wagner A.

Genome Res. 2015 Nov;25(11):1591-9. doi: 10.1101/gr.190868.115. Epub 2015 Aug 19.


Mouse Models as Predictors of Human Responses: Evolutionary Medicine.

Uhl EW, Warner NJ.

Curr Pathobiol Rep. 2015;3(3):219-223. Review.


Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence.

Blekhman R, Perry GH, Shahbaz S, Fiehn O, Clark AG, Gilad Y.

Sci Rep. 2014 Jul 28;4:5809. doi: 10.1038/srep05809.


Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness.

Bozek K, Wei Y, Yan Z, Liu X, Xiong J, Sugimoto M, Tomita M, Pääbo S, Pieszek R, Sherwood CC, Hof PR, Ely JJ, Steinhauser D, Willmitzer L, Bangsbo J, Hansson O, Call J, Giavalisco P, Khaitovich P.

PLoS Biol. 2014 May 27;12(5):e1001871. doi: 10.1371/journal.pbio.1001871. eCollection 2014 May.


Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity.

Börsch-Haubold AG, Montero I, Konrad K, Haubold B.

PLoS One. 2014 May 21;9(5):e97568. doi: 10.1371/journal.pone.0097568. eCollection 2014.


Evolution of human longevity uncoupled from caloric restriction mechanisms.

Zhao G, Guo S, Somel M, Khaitovich P.

PLoS One. 2014 Jan 6;9(1):e84117. doi: 10.1371/journal.pone.0084117. eCollection 2014.


Global regulatory architecture of human, mouse and rat tissue transcriptomes.

Prasad A, Kumar SS, Dessimoz C, Bleuler S, Laule O, Hruz T, Gruissem W, Zimmermann P.

BMC Genomics. 2013 Oct 20;14:716. doi: 10.1186/1471-2164-14-716.


Mechanisms of dietary response in mice and primates: a role for EGR1 in regulating the reaction to human-specific nutritional content.

Weng K, Hu H, Xu AG, Khaitovich P, Somel M.

PLoS One. 2012;7(8):e43915. doi: 10.1371/journal.pone.0043915. Epub 2012 Aug 24.


A selection index for gene expression evolution and its application to the divergence between humans and chimpanzees.

Warnefors M, Eyre-Walker A.

PLoS One. 2012;7(4):e34935. doi: 10.1371/journal.pone.0034935. Epub 2012 Apr 18.


Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y.

Genome Res. 2012 Apr;22(4):602-10. doi: 10.1101/gr.130468.111. Epub 2011 Dec 29.


A potential role for glucose transporters in the evolution of human brain size.

Fedrigo O, Pfefferle AD, Babbitt CC, Haygood R, Wall CE, Wray GA.

Brain Behav Evol. 2011;78(4):315-26. doi: 10.1159/000329852. Epub 2011 Oct 7.


Human and great ape red blood cells differ in plasmalogen levels and composition.

Moser AB, Steinberg SJ, Watkins PA, Moser HW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG.

Lipids Health Dis. 2011 Jun 17;10:101. doi: 10.1186/1476-511X-10-101.


Biological assessment of robust noise models in microarray data analysis.

Posekany A, Felsenstein K, Sykacek P.

Bioinformatics. 2011 Mar 15;27(6):807-14. doi: 10.1093/bioinformatics/btr018. Epub 2011 Jan 19.


Comparative expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution.

Pfefferle AD, Warner LR, Wang CW, Nielsen WJ, Babbitt CC, Fedrigo O, Wray GA.

J Hum Evol. 2011 Feb;60(2):205-212. doi: 10.1016/j.jhevol.2010.10.004. Epub 2010 Dec 28.

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