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Items: 1 to 20 of 122


Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.

Verdu CF, Guichoux E, Quevauvillers S, De Thier O, Laizet Y, Delcamp A, Gévaudant F, Monty A, Porté AJ, Lejeune P, Lassois L, Mariette S.

Ecol Evol. 2016 Sep 22;6(20):7323-7333. doi: 10.1002/ece3.2466. eCollection 2016 Oct.


Identification of HCV Resistant Variants against Direct Acting Antivirals in Plasma and Liver of Treatment Naïve Patients.

Raj VS, Hundie GB, Schürch AC, Smits SL, Pas SD, Le Pogam S, Janssen HLA, de Knegt RJ, Osterhaus ADME, Najera I, Boucher CA, Haagmans BL.

Sci Rep. 2017 Jul 5;7(1):4688. doi: 10.1038/s41598-017-04931-y.


PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.

Liao P, Satten GA, Hu YJ.

Genet Epidemiol. 2017 Jul;41(5):375-387. doi: 10.1002/gepi.22048. Epub 2017 May 31.


Standardization and quality management in next-generation sequencing.

Endrullat C, Glökler J, Franke P, Frohme M.

Appl Transl Genom. 2016 Jul 1;10:2-9. doi: 10.1016/j.atg.2016.06.001. eCollection 2016 Sep. Review.


The Effect of Human Genome Annotation Complexity on RNA-Seq Gene Expression Quantification.

Wu PY, Phan JH, Wang MD.

IEEE Int Conf Bioinform Biomed Workshops. 2012 Oct;2012:712-717.


A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.

Akogwu I, Wang N, Zhang C, Gong P.

Hum Genomics. 2016 Jul 25;10 Suppl 2:20. doi: 10.1186/s40246-016-0068-0.


Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions.

Zhou S, Bednar MM, Sturdevant CB, Hauser BM, Swanstrom R.

J Virol. 2016 Jul 27;90(16):7142-58. doi: 10.1128/JVI.00441-16. Print 2016 Aug 15.


HIV-1 Promoter Single Nucleotide Polymorphisms Are Associated with Clinical Disease Severity.

Nonnemacher MR, Pirrone V, Feng R, Moldover B, Passic S, Aiamkitsumrit B, Dampier W, Wojno A, Kilareski E, Blakey B, Ku TS, Shah S, Sullivan NT, Jacobson JM, Wigdahl B.

PLoS One. 2016 Apr 21;11(4):e0150835. doi: 10.1371/journal.pone.0150835. eCollection 2016.


The Rho GTPase Family Genes in Bivalvia Genomes: Sequence, Evolution and Expression Analysis.

Li X, Wang R, Xun X, Jiao W, Zhang M, Wang S, Wang S, Zhang L, Huang X, Hu X, Bao Z.

PLoS One. 2015 Dec 3;10(12):e0143932. doi: 10.1371/journal.pone.0143932. eCollection 2015.


A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies.

Puente-Sánchez F, Aguirre J, Parro V.

Nucleic Acids Res. 2016 Feb 29;44(4):e40. doi: 10.1093/nar/gkv1113. Epub 2015 Nov 8.


Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Sun CL, Thomas BC, Barrangou R, Banfield JF.

ISME J. 2016 Apr;10(4):858-70. doi: 10.1038/ismej.2015.162. Epub 2015 Sep 22.


New COL6A6 variant detected by whole-exome sequencing is linked to break points in intron 4 and 3'-UTR, deleting exon 5 of RHO, and causing adRP.

de Sousa Dias M, Hernan I, Delás B, Pascual B, Borràs E, Gamundi MJ, Mañé B, Fernández-San José P, Ayuso C, Carballo M.

Mol Vis. 2015 Aug 18;21:857-70. eCollection 2015.


Systems medicine of inflammaging.

Castellani GC, Menichetti G, Garagnani P, Giulia Bacalini M, Pirazzini C, Franceschi C, Collino S, Sala C, Remondini D, Giampieri E, Mosca E, Bersanelli M, Vitali S, Valle IF, Liò P, Milanesi L.

Brief Bioinform. 2016 May;17(3):527-40. doi: 10.1093/bib/bbv062. Epub 2015 Aug 24.


Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.

Zhou S, Jones C, Mieczkowski P, Swanstrom R.

J Virol. 2015 Aug;89(16):8540-55. doi: 10.1128/JVI.00522-15. Epub 2015 Jun 3.


Second generation physical and linkage maps of yellowtail (Seriola quinqueradiata) and comparison of synteny with four model fish.

Aoki JY, Kai W, Kawabata Y, Ozaki A, Yoshida K, Koyama T, Sakamoto T, Araki K.

BMC Genomics. 2015 May 24;16:406. doi: 10.1186/s12864-015-1600-7.


CallSim: Evaluation of Base Calls Using Sequencing Simulation.

Morrow JD, Higgs BW.

ISRN Bioinform. 2012 Dec 12;2012:371718. doi: 10.5402/2012/371718. eCollection 2012.


ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering.

Verbist B, Clement L, Reumers J, Thys K, Vapirev A, Talloen W, Wetzels Y, Meys J, Aerssens J, Bijnens L, Thas O.

BMC Bioinformatics. 2015 Feb 22;16:59. doi: 10.1186/s12859-015-0458-7.


Genetic Diversity of Tick-Borne Rickettsial Pathogens; Insights Gained from Distant Strains.

Pierlé SA, Rosshandler II, Kerudin AA, Sambono J, Lew-Tabor A, Rolls P, Rangel-Escareño C, Brayton KA.

Pathogens. 2014 Jan 14;3(1):57-72.

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