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Items: 1 to 20 of 21


Activation mode of the eukaryotic m2G10 tRNA methyltransferase Trm11 by its partner protein Trm112.

Bourgeois G, Marcoux J, Saliou JM, Cianférani S, Graille M.

Nucleic Acids Res. 2017 Feb 28;45(4):1971-1982. doi: 10.1093/nar/gkw1271.


A machine learning approach for ranking clusters of docked protein-protein complexes by pairwise cluster comparison.

Pfeiffenberger E, Chaleil RA, Moal IH, Bates PA.

Proteins. 2017 Mar;85(3):528-543. doi: 10.1002/prot.25218. Epub 2017 Jan 20.


Wuho Is a New Member in Maintaining Genome Stability through its Interaction with Flap Endonuclease 1.

Cheng IC, Chen BC, Shuai HH, Chien FC, Chen P, Hsieh TS.

PLoS Biol. 2016 Jan 11;14(1):e1002349. doi: 10.1371/journal.pbio.1002349. eCollection 2016 Jan.


Functional roles in S-adenosyl-L-methionine binding and catalysis for active site residues of the thiostrepton resistance methyltransferase.

Myers CL, Kuiper EG, Grant PC, Hernandez J, Conn GL, Honek JF.

FEBS Lett. 2015 Oct 24;589(21):3263-70. doi: 10.1016/j.febslet.2015.09.028. Epub 2015 Oct 9.


Mutation in WDR4 impairs tRNA m(7)G46 methylation and causes a distinct form of microcephalic primordial dwarfism.

Shaheen R, Abdel-Salam GM, Guy MP, Alomar R, Abdel-Hamid MS, Afifi HH, Ismail SI, Emam BA, Phizicky EM, Alkuraya FS.

Genome Biol. 2015 Sep 28;16:210. doi: 10.1186/s13059-015-0779-x.


Eukaryotic rRNA Modification by Yeast 5-Methylcytosine-Methyltransferases and Human Proliferation-Associated Antigen p120.

Bourgeois G, Ney M, Gaspar I, Aigueperse C, Schaefer M, Kellner S, Helm M, Motorin Y.

PLoS One. 2015 Jul 21;10(7):e0133321. doi: 10.1371/journal.pone.0133321. eCollection 2015.


Diversity in mechanism and function of tRNA methyltransferases.

Swinehart WE, Jackman JE.

RNA Biol. 2015;12(4):398-411. doi: 10.1080/15476286.2015.1008358. Review.


Two-subunit enzymes involved in eukaryotic post-transcriptional tRNA modification.

Guy MP, Phizicky EM.

RNA Biol. 2014;11(12):1608-18. doi: 10.1080/15476286.2015.1008360. Review.


Methylated nucleosides in tRNA and tRNA methyltransferases.

Hori H.

Front Genet. 2014 May 23;5:144. doi: 10.3389/fgene.2014.00144. eCollection 2014. Review.


Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.

Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q.

Nucleic Acids Res. 2014 Jan;42(1):509-25. doi: 10.1093/nar/gkt869. Epub 2013 Sep 29.


CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions.

Vangone A, Oliva R, Cavallo L.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S19. doi: 10.1186/1471-2105-13-S4-S19.


Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein.

Liger D, Mora L, Lazar N, Figaro S, Henri J, Scrima N, Buckingham RH, van Tilbeurgh H, Heurgué-Hamard V, Graille M.

Nucleic Acids Res. 2011 Aug;39(14):6249-59. doi: 10.1093/nar/gkr176. Epub 2011 Apr 7. Erratum in: Nucleic Acids Res. 2016 Feb 18;44(3):1482.


Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.

Hwang H, Vreven T, Pierce BG, Hung JH, Weng Z.

Proteins. 2010 Nov 15;78(15):3104-10. doi: 10.1002/prot.22764.


An integrated suite of fast docking algorithms.

Mashiach E, Schneidman-Duhovny D, Peri A, Shavit Y, Nussinov R, Wolfson HJ.

Proteins. 2010 Nov 15;78(15):3197-204. doi: 10.1002/prot.22790.


Selection of near-native poses in CAPRI rounds 13-19.

Qin S, Zhou HX.

Proteins. 2010 Nov 15;78(15):3166-73. doi: 10.1002/prot.22772.


A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19.

Sircar A, Chaudhury S, Kilambi KP, Berrondo M, Gray JJ.

Proteins. 2010 Nov 15;78(15):3115-23. doi: 10.1002/prot.22765.


Prp43p contains a processive helicase structural architecture with a specific regulatory domain.

Walbott H, Mouffok S, Capeyrou R, Lebaron S, Humbert O, van Tilbeurgh H, Henry Y, Leulliot N.

EMBO J. 2010 Jul 7;29(13):2194-204. doi: 10.1038/emboj.2010.102. Epub 2010 May 28.


N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network.

Tomikawa C, Yokogawa T, Kanai T, Hori H.

Nucleic Acids Res. 2010 Jan;38(3):942-57. doi: 10.1093/nar/gkp1059. Epub 2009 Nov 24.


Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition.

Nakamura A, Sheppard K, Yamane J, Yao M, Söll D, Tanaka I.

Nucleic Acids Res. 2010 Jan;38(2):672-82. doi: 10.1093/nar/gkp955. Epub 2009 Nov 11.


Crystal structures of human BTG2 and mouse TIS21 involved in suppression of CAF1 deadenylase activity.

Yang X, Morita M, Wang H, Suzuki T, Yang W, Luo Y, Zhao C, Yu Y, Bartlam M, Yamamoto T, Rao Z.

Nucleic Acids Res. 2008 Dec;36(21):6872-81. doi: 10.1093/nar/gkn825. Epub 2008 Oct 30.

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