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Items: 1 to 20 of 31


Predictive Nuclear Chromatin Characteristics of Melanoma and Dysplastic Nevi.

Hanna MG, Liu C, Rohde GK, Singh R.

J Pathol Inform. 2017 Apr 10;8:15. doi: 10.4103/jpi.jpi_84_16. eCollection 2017.


Dictionary-enhanced imaging cytometry.

Orth A, Schaak D, Schonbrun E.

Sci Rep. 2017 Feb 22;7:43148. doi: 10.1038/srep43148.


Accurate Detection of Dysmorphic Nuclei Using Dynamic Programming and Supervised Classification.

Verschuuren M, De Vylder J, Catrysse H, Robijns J, Philips W, De Vos WH.

PLoS One. 2017 Jan 26;12(1):e0170688. doi: 10.1371/journal.pone.0170688. eCollection 2017. Erratum in: PLoS One. 2017 Mar 6;12 (3):e0173701.


Point process models for localization and interdependence of punctate cellular structures.

Li Y, Majarian TD, Naik AW, Johnson GR, Murphy RF.

Cytometry A. 2016 Jul;89(7):633-43. doi: 10.1002/cyto.a.22873. Epub 2016 Jun 21.


Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.

Donovan RM, Tapia JJ, Sullivan DP, Faeder JR, Murphy RF, Dittrich M, Zuckerman DM.

PLoS Comput Biol. 2016 Feb 4;12(2):e1004611. doi: 10.1371/journal.pcbi.1004611. eCollection 2016 Feb.


Building cell models and simulations from microscope images.

Murphy RF.

Methods. 2016 Mar 1;96:33-9. doi: 10.1016/j.ymeth.2015.10.011. Epub 2015 Oct 17. Review.


Joint modeling of cell and nuclear shape variation.

Johnson GR, Buck TE, Sullivan DP, Rohde GK, Murphy RF.

Mol Biol Cell. 2015 Nov 5;26(22):4046-56. doi: 10.1091/mbc.E15-06-0370. Epub 2015 Sep 9.


Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens.

Tosun AB, Yergiyev O, Kolouri S, Silverman JF, Rohde GK.

Cytometry A. 2015 Apr;87(4):326-33. doi: 10.1002/cyto.a.22602. Epub 2015 Jan 16.


Accurate diagnosis of thyroid follicular lesions from nuclear morphology using supervised learning.

Ozolek JA, Tosun AB, Wang W, Chen C, Kolouri S, Basu S, Huang H, Rohde GK.

Med Image Anal. 2014 Jul;18(5):772-80. doi: 10.1016/ Epub 2014 Apr 21.


Mapping stain distribution in pathology slides using whole slide imaging.

Yeh FC, Ye Q, Hitchens TK, Wu YL, Parwani AV, Ho C.

J Pathol Inform. 2014 Jan 31;5(1):1. doi: 10.4103/2153-3539.126140. eCollection 2014.


Detecting and visualizing cell phenotype differences from microscopy images using transport-based morphometry.

Basu S, Kolouri S, Rohde GK.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3448-53. doi: 10.1073/pnas.1319779111. Epub 2014 Feb 18.


Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Kong J, Cooper LA, Wang F, Gao J, Teodoro G, Scarpace L, Mikkelsen T, Schniederjan MJ, Moreno CS, Saltz JH, Brat DJ.

PLoS One. 2013 Nov 13;8(11):e81049. doi: 10.1371/journal.pone.0081049. eCollection 2013.


Distinct cell shapes determine accurate chemotaxis.

Tweedy L, Meier B, Stephan J, Heinrich D, Endres RG.

Sci Rep. 2013;3:2606. doi: 10.1038/srep02606.


A linear optimal transportation framework for quantifying and visualizing variations in sets of images.

Wang W, SlepĨev D, Basu S, Ozolek JA, Rohde GK.

Int J Comput Vis. 2013 Jan 1;101(2):254-269.


A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching.

Chen C, Wang W, Ozolek JA, Rohde GK.

Cytometry A. 2013 May;83(5):495-507. doi: 10.1002/cyto.a.22280. Epub 2013 Apr 8.


Toward the virtual cell: automated approaches to building models of subcellular organization "learned" from microscopy images.

Buck TE, Li J, Rohde GK, Murphy RF.

Bioessays. 2012 Sep;34(9):791-9. doi: 10.1002/bies.201200032. Epub 2012 Jul 10. Review.


CellOrganizer: Image-derived models of subcellular organization and protein distribution.

Murphy RF.

Methods Cell Biol. 2012;110:179-93. doi: 10.1016/B978-0-12-388403-9.00007-2.


Robust nuclear lamina-based cell classification of aging and senescent cells.

Righolt CH, van 't Hoff ML, Vermolen BJ, Young IT, Raz V.

Aging (Albany NY). 2011 Dec;3(12):1192-201.


Penalized Fisher Discriminant Analysis and Its Application to Image-Based Morphometry.

Wang W, Mo Y, Ozolek JA, Rohde GK.

Pattern Recognit Lett. 2011 Nov 1;32(15):2128-2135.

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