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Items: 1 to 20 of 126


A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major.

Catharina L, Lima CR, Franca A, Guimarães ACR, Alves-Ferreira M, Tuffery P, Derreumaux P, Carels N.

Bioinform Biol Insights. 2017 Jun 12;11:1177932217712471. doi: 10.1177/1177932217712471. eCollection 2017.


De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14+ monocytes and in adipose tissue.

Xue C, Zhang X, Zhang H, Ferguson JF, Wang Y, Hinkle CC, Li M, Reilly MP.

Physiol Genomics. 2017 Jun 1;49(6):287-305. doi: 10.1152/physiolgenomics.00001.2017. Epub 2017 Apr 7.


Genomic structure of the horse major histocompatibility complex class II region resolved using PacBio long-read sequencing technology.

Viļuma A, Mikko S, Hahn D, Skow L, Andersson G, Bergström TF.

Sci Rep. 2017 Mar 31;7:45518. doi: 10.1038/srep45518.


Identification of long non-coding transcripts with feature selection: a comparative study.

Ventola GM, Noviello TM, D'Aniello S, Spagnuolo A, Ceccarelli M, Cerulo L.

BMC Bioinformatics. 2017 Mar 23;18(1):187. doi: 10.1186/s12859-017-1594-z.


A fuzzy method for RNA-Seq differential expression analysis in presence of multireads.

Consiglio A, Mencar C, Grillo G, Marzano F, Caratozzolo MF, Liuni S.

BMC Bioinformatics. 2016 Nov 8;17(Suppl 12):345. doi: 10.1186/s12859-016-1195-2.


The Effect of Human Genome Annotation Complexity on RNA-Seq Gene Expression Quantification.

Wu PY, Phan JH, Wang MD.

IEEE Int Conf Bioinform Biomed Workshops. 2012 Oct;2012:712-717.


Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.

Raj A, Wang SH, Shim H, Harpak A, Li YI, Engelmann B, Stephens M, Gilad Y, Pritchard JK.

Elife. 2016 May 27;5. pii: e13328. doi: 10.7554/eLife.13328.


Topology based identification and comprehensive classification of four-transmembrane helix containing proteins (4TMs) in the human genome.

Attwood MM, Krishnan A, Pivotti V, Yazdi S, Almén MS, Schiöth HB.

BMC Genomics. 2016 Mar 31;17:268. doi: 10.1186/s12864-016-2592-7.


Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data.

Song X, Sun L, Luo H, Ma Q, Zhao Y, Pei D.

Genes (Basel). 2016 Feb 29;7(3). pii: E11. doi: 10.3390/genes7030011.


In Silico Functional Annotation of Genomic Variation.

Butkiewicz M, Bush WS.

Curr Protoc Hum Genet. 2016 Jan 1;88:Unit 6.15. doi: 10.1002/0471142905.hg0615s88. Review.


Ensembl 2016.

Yates A, Akanni W, Amode MR, Barrell D, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Johnson N, Juettemann T, Keenan S, Lavidas I, Martin FJ, Maurel T, McLaren W, Murphy DN, Nag R, Nuhn M, Parker A, Patricio M, Pignatelli M, Rahtz M, Riat HS, Sheppard D, Taylor K, Thormann A, Vullo A, Wilder SP, Zadissa A, Birney E, Harrow J, Muffato M, Perry E, Ruffier M, Spudich G, Trevanion SJ, Cunningham F, Aken BL, Zerbino DR, Flicek P.

Nucleic Acids Res. 2016 Jan 4;44(D1):D710-6. doi: 10.1093/nar/gkv1157. Epub 2015 Dec 19.


DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish.

Tan H, Onichtchouk D, Winata C.

Zebrafish. 2016 Feb;13(1):54-60. doi: 10.1089/zeb.2015.1179. Epub 2015 Dec 15.


Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond.

Pfau T, Pacheco MP, Sauter T.

Brief Bioinform. 2016 Nov;17(6):1060-1069. Epub 2015 Nov 28.


Comprehensive comparative homeobox gene annotation in human and mouse.

Wilming LG, Boychenko V, Harrow JL.

Database (Oxford). 2015 Sep 27;2015. pii: bav091. doi: 10.1093/database/bav091. Print 2015.


Orthology for comparative genomics in the mouse genome database.

Dolan ME, Baldarelli RM, Bello SM, Ni L, McAndrews MS, Bult CJ, Kadin JA, Richardson JE, Ringwald M, Eppig JT, Blake JA.

Mamm Genome. 2015 Aug;26(7-8):305-13. doi: 10.1007/s00335-015-9588-5. Epub 2015 Jul 30. Review.


Mouse Genome Database: From sequence to phenotypes and disease models.

Eppig JT, Richardson JE, Kadin JA, Smith CL, Blake JA, Bult CJ; MGD Team.

Genesis. 2015 Aug;53(8):458-73. doi: 10.1002/dvg.22874. Epub 2015 Jul 27. Review.


Informatics resources for the Collaborative Cross and related mouse populations.

Morgan AP, Welsh CE.

Mamm Genome. 2015 Oct;26(9-10):521-39. doi: 10.1007/s00335-015-9581-z. Epub 2015 Jul 2. Review. No abstract available.


A unified gene catalog for the laboratory mouse reference genome.

Zhu Y, Richardson JE, Hale P, Baldarelli RM, Reed DJ, Recla JM, Sinclair R, Reddy TB, Bult CJ.

Mamm Genome. 2015 Aug;26(7-8):295-304. doi: 10.1007/s00335-015-9571-1. Epub 2015 Jun 18.


BCR repertoire sequencing: different patterns of B-cell activation after two Meningococcal vaccines.

Galson JD, Clutterbuck EA, Trück J, Ramasamy MN, Münz M, Fowler A, Cerundolo V, Pollard AJ, Lunter G, Kelly DF.

Immunol Cell Biol. 2015 Nov;93(10):885-95. doi: 10.1038/icb.2015.57. Epub 2015 May 15.


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