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Items: 1 to 20 of 22

1.

Conservation of immune gene signatures in solid tumors and prognostic implications.

Chifman J, Pullikuth A, Chou JW, Bedognetti D, Miller LD.

BMC Cancer. 2016 Nov 22;16(1):911.

2.

Cardiomyocyte-specific deletion of the G protein-coupled estrogen receptor (GPER) leads to left ventricular dysfunction and adverse remodeling: A sex-specific gene profiling analysis.

Wang H, Sun X, Chou J, Lin M, Ferrario CM, Zapata-Sudo G, Groban L.

Biochim Biophys Acta. 2017 Aug;1863(8):1870-1882. doi: 10.1016/j.bbadis.2016.10.003. Epub 2016 Oct 8.

PMID:
27725247
3.

Effects of mannose-binding lectin on pulmonary gene expression and innate immune inflammatory response to ozone.

Ciencewicki JM, Verhein KC, Gerrish K, McCaw ZR, Li J, Bushel PR, Kleeberger SR.

Am J Physiol Lung Cell Mol Physiol. 2016 Aug 1;311(2):L280-91. doi: 10.1152/ajplung.00205.2015. Epub 2016 Apr 22.

4.

Limited but durable changes to cellular gene expression in a model of latent adenovirus infection are reflected in childhood leukemic cell lines.

Ornelles DA, Gooding LR, Dickherber ML, Policard M, Garnett-Benson C.

Virology. 2016 Jul;494:67-77. doi: 10.1016/j.virol.2016.03.015. Epub 2016 Apr 14.

5.

EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data.

Li J, Bushel PR.

BMC Genomics. 2016 Mar 22;17:255. doi: 10.1186/s12864-016-2584-7.

6.

Toxicogenomics profiling of bone marrow from rats treated with topotecan in combination with oxaliplatin: a mechanistic strategy to inform combination toxicity.

Davis M, Li J, Knight E, Eldridge SR, Daniels KK, Bushel PR.

Front Genet. 2015 Feb 12;6:14. doi: 10.3389/fgene.2015.00014. eCollection 2015.

7.

Novel Roles for Notch3 and Notch4 Receptors in Gene Expression and Susceptibility to Ozone-Induced Lung Inflammation in Mice.

Verhein KC, McCaw Z, Gladwell W, Trivedi S, Bushel PR, Kleeberger SR.

Environ Health Perspect. 2015 Aug;123(8):799-805. doi: 10.1289/ehp.1408852. Epub 2015 Feb 6.

8.

Development of phenotypic and transcriptional biomarkers to evaluate relative activity of potentially estrogenic chemicals in ovariectomized mice.

Hewitt SC, Winuthayanon W, Pockette B, Kerns RT, Foley JF, Flagler N, Ney E, Suksamrarn A, Piyachaturawat P, Bushel PR, Korach KS.

Environ Health Perspect. 2015 Apr;123(4):344-52. doi: 10.1289/ehp.1307935. Epub 2015 Jan 9.

9.

Comparative toxicogenomic responses of mercuric and methyl-mercury.

McElwee MK, Ho LA, Chou JW, Smith MV, Freedman JH.

BMC Genomics. 2013 Oct 11;14:698. doi: 10.1186/1471-2164-14-698.

10.

Gene expression signatures but not cell cycle checkpoint functions distinguish AT carriers from normal individuals.

Zhang L, Simpson DA, Innes CL, Chou J, Bushel PR, Paules RS, Kaufmann WK, Zhou T.

Physiol Genomics. 2013 Oct 1;45(19):907-16. doi: 10.1152/physiolgenomics.00064.2013. Epub 2013 Aug 13.

11.

Identification of Identical Transcript Changes in Liver and Whole Blood during Acetaminophen Toxicity.

Zhang L, Bushel PR, Chou J, Zhou T, Watkins PB.

Front Genet. 2012 Sep 4;3:162. doi: 10.3389/fgene.2012.00162. eCollection 2012.

12.

Transcript profiling identifies dynamic gene expression patterns and an important role for Nrf2/Keap1 pathway in the developing mouse esophagus.

Chen H, Li J, Li H, Hu Y, Tevebaugh W, Yamamoto M, Que J, Chen X.

PLoS One. 2012;7(5):e36504. doi: 10.1371/journal.pone.0036504. Epub 2012 May 2. Erratum in: PLoS One. 2012;7(5): doi/10.1371/annotation/b2554ac2-5eec-4fc1-b625-c79f0cc064ed.

13.

Strategies to defeat ketamine-induced neonatal brain injury.

Turner CP, Gutierrez S, Liu C, Miller L, Chou J, Finucane B, Carnes A, Kim J, Shing E, Haddad T, Phillips A.

Neuroscience. 2012 May 17;210:384-92. doi: 10.1016/j.neuroscience.2012.02.015. Epub 2012 Feb 23.

14.

Sources of variance in baseline gene expression in the rodent liver.

Corton JC, Bushel PR, Fostel J, O'Lone RB.

Mutat Res. 2012 Aug 15;746(2):104-12. doi: 10.1016/j.mrgentox.2011.12.017. Epub 2012 Jan 5. Review.

15.

Immune modulation during latent herpesvirus infection.

White DW, Suzanne Beard R, Barton ES.

Immunol Rev. 2012 Jan;245(1):189-208. doi: 10.1111/j.1600-065X.2011.01074.x. Review.

16.

Importance of correlation between gene expression levels: application to the type I interferon signature in rheumatoid arthritis.

Reynier F, Petit F, Paye M, Turrel-Davin F, Imbert PE, Hot A, Mougin B, Miossec P.

PLoS One. 2011;6(10):e24828. doi: 10.1371/journal.pone.0024828. Epub 2011 Oct 17.

17.

Genomic-derived markers for early detection of calcineurin inhibitor immunosuppressant-mediated nephrotoxicity.

Cui Y, Huang Q, Auman JT, Knight B, Jin X, Blanchard KT, Chou J, Jayadev S, Paules RS.

Toxicol Sci. 2011 Nov;124(1):23-34. doi: 10.1093/toxsci/kfr217. Epub 2011 Aug 24.

18.

The evolution of bioinformatics in toxicology: advancing toxicogenomics.

Afshari CA, Hamadeh HK, Bushel PR.

Toxicol Sci. 2011 Mar;120 Suppl 1:S225-37. doi: 10.1093/toxsci/kfq373. Epub 2010 Dec 22. Review.

19.

Genomic indicators in the blood predict drug-induced liver injury.

Huang J, Shi W, Zhang J, Chou JW, Paules RS, Gerrish K, Li J, Luo J, Wolfinger RD, Bao W, Chu TM, Nikolsky Y, Nikolskaya T, Dosymbekov D, Tsyganova MO, Shi L, Fan X, Corton JC, Chen M, Cheng Y, Tong W, Fang H, Bushel PR.

Pharmacogenomics J. 2010 Aug;10(4):267-77. doi: 10.1038/tpj.2010.33.

20.

SFSSClass: an integrated approach for miRNA based tumor classification.

Mitra R, Bandyopadhyay S, Maulik U, Zhang MQ.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S22. doi: 10.1186/1471-2105-11-S1-S22.

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