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Items: 1 to 20 of 82

1.

Assessing regulatory information in developmental gene regulatory networks.

Peter IS, Davidson EH.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5862-5869. doi: 10.1073/pnas.1610616114.

2.

Reconstructing blood stem cell regulatory network models from single-cell molecular profiles.

Hamey FK, Nestorowa S, Kinston SJ, Kent DG, Wilson NK, Göttgens B.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5822-5829. doi: 10.1073/pnas.1610609114.

3.

A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.

Ng FS, Ruau D, Wernisch L, Göttgens B.

Brief Bioinform. 2016 Oct 25. pii: bbw102. [Epub ahead of print]

PMID:
27780826
4.

A Method to Identify and Analyze Biological Programs through Automated Reasoning.

Yordanov B, Dunn SJ, Kugler H, Smith A, Martello G, Emmott S.

NPJ Syst Biol Appl. 2016 Jul 7;2. pii: 16010. doi: 10.1038/npjsba.2016.10.

5.

Hematopoietic (stem) cell development - how divergent are the roads taken?

Kauts ML, Vink CS, Dzierzak E.

FEBS Lett. 2016 Nov;590(22):3975-3986. doi: 10.1002/1873-3468.12372. Epub 2016 Sep 1. Review.

6.

The Hemogenic Competence of Endothelial Progenitors Is Restricted by Runx1 Silencing during Embryonic Development.

Eliades A, Wareing S, Marinopoulou E, Fadlullah MZ, Patel R, Grabarek JB, Plusa B, Lacaud G, Kouskoff V.

Cell Rep. 2016 Jun 7;15(10):2185-99. doi: 10.1016/j.celrep.2016.05.001. Epub 2016 May 26.

7.

Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva.

Ch Ho E, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP.

Immunol Cell Biol. 2016 Oct;94(9):861-874. doi: 10.1038/icb.2016.51. Epub 2016 May 19. Erratum in: Immunol Cell Biol. 2017 Aug;95(7):647.

8.

Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming.

Moreau T, Evans AL, Vasquez L, Tijssen MR, Yan Y, Trotter MW, Howard D, Colzani M, Arumugam M, Wu WH, Dalby A, Lampela R, Bouet G, Hobbs CM, Pask DC, Payne H, Ponomaryov T, Brill A, Soranzo N, Ouwehand WH, Pedersen RA, Ghevaert C.

Nat Commun. 2016 Apr 7;7:11208. doi: 10.1038/ncomms11208. Erratum in: Nat Commun. 2017 Jul 28;8:15076.

9.

An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability.

Schütte J, Wang H, Antoniou S, Jarratt A, Wilson NK, Riepsaame J, Calero-Nieto FJ, Moignard V, Basilico S, Kinston SJ, Hannah RL, Chan MC, Nürnberg ST, Ouwehand WH, Bonzanni N, de Bruijn MF, Göttgens B.

Elife. 2016 Feb 22;5:e11469. doi: 10.7554/eLife.11469.

10.

A Role for the Long Noncoding RNA SENCR in Commitment and Function of Endothelial Cells.

Boulberdaa M, Scott E, Ballantyne M, Garcia R, Descamps B, Angelini GD, Brittan M, Hunter A, McBride M, McClure J, Miano JM, Emanueli C, Mills NL, Mountford JC, Baker AH.

Mol Ther. 2016 May;24(5):978-90. doi: 10.1038/mt.2016.41. Epub 2016 Feb 22.

11.

Functional and molecular characterization of mouse Gata2-independent hematopoietic progenitors.

Kaimakis P, de Pater E, Eich C, Solaimani Kartalaei P, Kauts ML, Vink CS, van der Linden R, Jaegle M, Yokomizo T, Meijer D, Dzierzak E.

Blood. 2016 Mar 17;127(11):1426-37. doi: 10.1182/blood-2015-10-673749. Epub 2016 Feb 1.

12.

ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.

Lelieveld SH, Schütte J, Dijkstra MJ, Bawono P, Kinston SJ, Göttgens B, Heringa J, Bonzanni N.

Nucleic Acids Res. 2016 May 5;44(8):e72. doi: 10.1093/nar/gkv1518. Epub 2015 Dec 31.

13.

Definitive Hematopoiesis in the Yolk Sac Emerges from Wnt-Responsive Hemogenic Endothelium Independently of Circulation and Arterial Identity.

Frame JM, Fegan KH, Conway SJ, McGrath KE, Palis J.

Stem Cells. 2016 Feb;34(2):431-44. doi: 10.1002/stem.2213. Epub 2015 Oct 23.

14.

Overlapping Requirements for Tet2 and Tet3 in Normal Development and Hematopoietic Stem Cell Emergence.

Li C, Lan Y, Schwartz-Orbach L, Korol E, Tahiliani M, Evans T, Goll MG.

Cell Rep. 2015 Aug 18;12(7):1133-43. doi: 10.1016/j.celrep.2015.07.025. Epub 2015 Aug 6.

15.

GATA2(-/-) human ESCs undergo attenuated endothelial to hematopoietic transition and thereafter granulocyte commitment.

Huang K, Du J, Ma N, Liu J, Wu P, Dong X, Meng M, Wang W, Chen X, Shi X, Chen Q, Yang Z, Chen S, Zhang J, Li Y, Li W, Zheng Y, Cai J, Li P, Sun X, Wang J, Pei D, Pan G.

Cell Regen (Lond). 2015 Aug 5;4(1):4. doi: 10.1186/s13619-015-0018-7. eCollection 2015.

16.

CD44, Hyaluronan, the Hematopoietic Stem Cell, and Leukemia-Initiating Cells.

Zöller M.

Front Immunol. 2015 May 26;6:235. doi: 10.3389/fimmu.2015.00235. eCollection 2015. Review.

17.

Endoglin potentiates nitric oxide synthesis to enhance definitive hematopoiesis.

Nasrallah R, Knezevic K, Thai T, Thomas SR, Göttgens B, Lacaud G, Kouskoff V, Pimanda JE.

Biol Open. 2015 May 15;4(7):819-29. doi: 10.1242/bio.011494.

18.

SMAD1 and SMAD5 Expression Is Coordinately Regulated by FLI1 and GATA2 during Endothelial Development.

Marks-Bluth J, Khanna A, Chandrakanthan V, Thoms J, Bee T, Eich C, Kang YC, Knezevic K, Qiao Q, Fitch S, Oxburgh L, Ottersbach K, Dzierzak E, de Bruijn MF, Pimanda JE.

Mol Cell Biol. 2015 Jun;35(12):2165-72. doi: 10.1128/MCB.00239-15. Epub 2015 Apr 13.

19.

Induction of hematopoietic and endothelial cell program orchestrated by ETS transcription factor ER71/ETV2.

Liu F, Li D, Yu YY, Kang I, Cha MJ, Kim JY, Park C, Watson DK, Wang T, Choi K.

EMBO Rep. 2015 May;16(5):654-69. doi: 10.15252/embr.201439939. Epub 2015 Mar 23.

20.

Transcription factor-mediated reprogramming toward hematopoietic stem cells.

Ebina W, Rossi DJ.

EMBO J. 2015 Mar 12;34(6):694-709. doi: 10.15252/embj.201490804. Epub 2015 Feb 20. Review.

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