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Items: 1 to 20 of 112


proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.

Mende DR, Letunic I, Huerta-Cepas J, Li SS, Forslund K, Sunagawa S, Bork P.

Nucleic Acids Res. 2017 Jan 4;45(D1):D529-D534. doi: 10.1093/nar/gkw989.


Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.


Sub-Cellular Localization and Complex Formation by Aminoacyl-tRNA Synthetases in Cyanobacteria: Evidence for Interaction of Membrane-Anchored ValRS with ATP Synthase.

Santamaría-Gómez J, Ochoa de Alda JA, Olmedo-Verd E, Bru-Martínez R, Luque I.

Front Microbiol. 2016 Jun 6;7:857. doi: 10.3389/fmicb.2016.00857.


Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria.

Hamilton TL, Bovee RJ, Sattin SR, Mohr W, Gilhooly WP 3rd, Lyons TW, Pearson A, Macalady JL.

Front Microbiol. 2016 Apr 27;7:598. doi: 10.3389/fmicb.2016.00598.


Evolutionary assembly patterns of prokaryotic genomes.

Press MO, Queitsch C, Borenstein E.

Genome Res. 2016 Jun;26(6):826-33. doi: 10.1101/gr.200097.115.


Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits.

Eckshtain-Levi N, Shkedy D, Gershovits M, Da Silva GM, Tamir-Ariel D, Walcott R, Pupko T, Burdman S.

Front Microbiol. 2016 Apr 6;7:430. doi: 10.3389/fmicb.2016.00430.


Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen.

Nobu MK, Narihiro T, Kuroda K, Mei R, Liu WT.

ISME J. 2016 Oct;10(10):2478-87. doi: 10.1038/ismej.2016.33.


Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites.

Palmer M, de Maayer P, Poulsen M, Steenkamp ET, van Zyl E, Coutinho TA, Venter SN.

Stand Genomic Sci. 2016 Mar 1;11:23. doi: 10.1186/s40793-016-0144-z.


Functional metagenomic screen reveals new and diverse microbial rhodopsins.

Pushkarev A, Béjà O.

ISME J. 2016 Sep;10(9):2331-5. doi: 10.1038/ismej.2016.7.


Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction.

Seitz KW, Lazar CS, Hinrichs KU, Teske AP, Baker BJ.

ISME J. 2016 Jul;10(7):1696-705. doi: 10.1038/ismej.2015.233.


Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution.

Corel E, Lopez P, Méheust R, Bapteste E.

Trends Microbiol. 2016 Mar;24(3):224-37. doi: 10.1016/j.tim.2015.12.003. Review.


Draft Genome Sequences of Two Novel Acidimicrobiaceae Members from an Acid Mine Drainage Biofilm Metagenome.

Pinto AJ, Sharp JO, Yoder MJ, Almstrand R.

Genome Announc. 2016 Jan 14;4(1). pii: e01563-15. doi: 10.1128/genomeA.01563-15.


Draft Genome Sequence of a Novel Desulfobacteraceae Member from a Sulfate-Reducing Bioreactor Metagenome.

Almstrand R, Pinto AJ, Figueroa LA, Sharp JO.

Genome Announc. 2016 Jan 14;4(1). pii: e01540-15. doi: 10.1128/genomeA.01540-15.


Horizontally transferred genes cluster spatially and metabolically.

Dilthey A, Lercher MJ.

Biol Direct. 2015 Dec 21;10:72. doi: 10.1186/s13062-015-0102-5.


Current and future resources for functional metagenomics.

Lam KN, Cheng J, Engel K, Neufeld JD, Charles TC.

Front Microbiol. 2015 Oct 29;6:1196. doi: 10.3389/fmicb.2015.01196.


Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria.

Bershtein S, Serohijos AW, Bhattacharyya S, Manhart M, Choi JM, Mu W, Zhou J, Shakhnovich EI.

PLoS Genet. 2015 Oct 20;11(10):e1005612. doi: 10.1371/journal.pgen.1005612.


Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.

Maddamsetti R, Hatcher PJ, Cruveiller S, Médigue C, Barrick JE, Lenski RE.

Mol Biol Evol. 2015 Nov;32(11):2897-904. doi: 10.1093/molbev/msv161.


The Contribution of Genetic Recombination to CRISPR Array Evolution.

Kupczok A, Landan G, Dagan T.

Genome Biol Evol. 2015 Jun 16;7(7):1925-39. doi: 10.1093/gbe/evv113.


Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries.

Lam KN, Charles TC.

Microbiome. 2015 May 20;3:22. doi: 10.1186/s40168-015-0086-5.


Horizontal gene transfer and genome evolution in Methanosarcina.

Garushyants SK, Kazanov MD, Gelfand MS.

BMC Evol Biol. 2015 Jun 5;15:102. doi: 10.1186/s12862-015-0393-2.

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