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Role of ATP Hydrolysis in Cyanobacterial Circadian Oscillator.

Das S, Terada TP, Sasai M.

Sci Rep. 2017 Dec 12;7(1):17469. doi: 10.1038/s41598-017-17717-z.


Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations.

Paijmans J, Lubensky DK, Ten Wolde PR.

Biophys J. 2017 Jul 11;113(1):157-173. doi: 10.1016/j.bpj.2017.05.048.


The cyanobacterial circadian clock follows midday in vivo and in vitro.

Leypunskiy E, Lin J, Yoo H, Lee U, Dinner AR, Rust MJ.

Elife. 2017 Jul 7;6. pii: e23539. doi: 10.7554/eLife.23539.


Low temperature nullifies the circadian clock in cyanobacteria through Hopf bifurcation.

Murayama Y, Kori H, Oshima C, Kondo T, Iwasaki H, Ito H.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5641-5646. doi: 10.1073/pnas.1620378114. Epub 2017 May 17.


Shaping development by stochasticity and dynamics in gene regulation.

Dong P, Liu Z.

Open Biol. 2017 May;7(5). pii: 170030. doi: 10.1098/rsob.170030. Review.


Architecture and mechanism of the central gear in an ancient molecular timer.

Egli M.

J R Soc Interface. 2017 Mar;14(128). pii: 20161065. doi: 10.1098/rsif.2016.1065. Review.


Structural basis of the day-night transition in a bacterial circadian clock.

Tseng R, Goularte NF, Chavan A, Luu J, Cohen SE, Chang YG, Heisler J, Li S, Michael AK, Tripathi S, Golden SS, LiWang A, Partch CL.

Science. 2017 Mar 17;355(6330):1174-1180. doi: 10.1126/science.aag2516. Epub 2017 Mar 16.


A thermodynamically consistent model of the post-translational Kai circadian clock.

Paijmans J, Lubensky DK, Ten Wolde PR.

PLoS Comput Biol. 2017 Mar 15;13(3):e1005415. doi: 10.1371/journal.pcbi.1005415. eCollection 2017 Mar.


Systems Biology-Derived Discoveries of Intrinsic Clocks.

Millius A, Ueda HR.

Front Neurol. 2017 Feb 6;8:25. doi: 10.3389/fneur.2017.00025. eCollection 2017. Review.


Timing the day: what makes bacterial clocks tick?

Johnson CH, Zhao C, Xu Y, Mori T.

Nat Rev Microbiol. 2017 Apr;15(4):232-242. doi: 10.1038/nrmicro.2016.196. Epub 2017 Feb 20. Review.


Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach.

Westermark S, Steuer R.

Front Bioeng Biotechnol. 2016 Dec 26;4:95. doi: 10.3389/fbioe.2016.00095. eCollection 2016. Review.


Frequency doubling in the cyanobacterial circadian clock.

Martins BM, Das AK, Antunes L, Locke JC.

Mol Syst Biol. 2016 Dec 22;12(12):896. doi: 10.15252/msb.20167087.


Structural characterization of the circadian clock protein complex composed of KaiB and KaiC by inverse contrast-matching small-angle neutron scattering.

Sugiyama M, Yagi H, Ishii K, Porcar L, Martel A, Oyama K, Noda M, Yunoki Y, Murakami R, Inoue R, Sato N, Oba Y, Terauchi K, Uchiyama S, Kato K.

Sci Rep. 2016 Oct 18;6:35567. doi: 10.1038/srep35567.


Conversion between two conformational states of KaiC is induced by ATP hydrolysis as a trigger for cyanobacterial circadian oscillation.

Oyama K, Azai C, Nakamura K, Tanaka S, Terauchi K.

Sci Rep. 2016 Sep 1;6:32443. doi: 10.1038/srep32443.


Costs of Clock-Environment Misalignment in Individual Cyanobacterial Cells.

Lambert G, Chew J, Rust MJ.

Biophys J. 2016 Aug 23;111(4):883-891. doi: 10.1016/j.bpj.2016.07.008.


Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.

Hurley JM, Loros JJ, Dunlap JC.

Trends Biochem Sci. 2016 Oct;41(10):834-46. doi: 10.1016/j.tibs.2016.07.009. Epub 2016 Aug 3. Review.


Long-term dynamics of multisite phosphorylation.

Rubinstein BY, Mattingly HH, Berezhkovskii AM, Shvartsman SY.

Mol Biol Cell. 2016 Jul 15;27(14):2331-40. doi: 10.1091/mbc.E16-03-0137. Epub 2016 May 25.


Diurnal Regulation of Cellular Processes in the Cyanobacterium Synechocystis sp. Strain PCC 6803: Insights from Transcriptomic, Fluxomic, and Physiological Analyses.

Saha R, Liu D, Hoynes-O'Connor A, Liberton M, Yu J, Bhattacharyya-Pakrasi M, Balassy A, Zhang F, Moon TS, Maranas CD, Pakrasi HB.

MBio. 2016 May 3;7(3). pii: e00464-16. doi: 10.1128/mBio.00464-16.


A dynamic interaction process between KaiA and KaiC is critical to the cyanobacterial circadian oscillator.

Dong P, Fan Y, Sun J, Lv M, Yi M, Tan X, Liu S.

Sci Rep. 2016 Apr 26;6:25129. doi: 10.1038/srep25129.

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