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Items: 20

1.

Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon.

Ranganathan S, Bai G, Lyubetskaya A, Knapp GS, Peterson MW, Gazdik M, C Gomes AL, Galagan JE, McDonough KA.

Nucleic Acids Res. 2016 Jan 8;44(1):134-51. doi: 10.1093/nar/gkv889. Epub 2015 Sep 10.

2.

Deciphering the metabolic response of Mycobacterium tuberculosis to nitrogen stress.

Williams KJ, Jenkins VA, Barton GR, Bryant WA, Krishnan N, Robertson BD.

Mol Microbiol. 2015 Sep;97(6):1142-57. doi: 10.1111/mmi.13091. Epub 2015 Jul 17.

3.

Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria.

Knapp GS, Lyubetskaya A, Peterson MW, Gomes AL, Ma Z, Galagan JE, McDonough KA.

Nucleic Acids Res. 2015 Jun 23;43(11):5377-93. doi: 10.1093/nar/gkv420. Epub 2015 May 4.

4.

Two DHH subfamily 1 proteins in Streptococcus pneumoniae possess cyclic di-AMP phosphodiesterase activity and affect bacterial growth and virulence.

Bai Y, Yang J, Eisele LE, Underwood AJ, Koestler BJ, Waters CM, Metzger DW, Bai G.

J Bacteriol. 2013 Nov;195(22):5123-32. doi: 10.1128/JB.00769-13. Epub 2013 Sep 6.

5.

The vitamin B₆ biosynthesis pathway in Streptococcus pneumoniae is controlled by pyridoxal 5'-phosphate and the transcription factor PdxR and has an impact on ear infection.

El Qaidi S, Yang J, Zhang JR, Metzger DW, Bai G.

J Bacteriol. 2013 May;195(10):2187-96. doi: 10.1128/JB.00041-13. Epub 2013 Mar 8.

6.

Database resources for the tuberculosis community.

Lew JM, Mao C, Shukla M, Warren A, Will R, Kuznetsov D, Xenarios I, Robertson BD, Gordon SV, Schnappinger D, Cole ST, Sobral B.

Tuberculosis (Edinb). 2013 Jan;93(1):12-7. doi: 10.1016/j.tube.2012.11.003. Epub 2013 Jan 17. Review.

7.

Mycobacterium tuberculosis Rv3586 (DacA) is a diadenylate cyclase that converts ATP or ADP into c-di-AMP.

Bai Y, Yang J, Zhou X, Ding X, Eisele LE, Bai G.

PLoS One. 2012;7(4):e35206. doi: 10.1371/journal.pone.0035206. Epub 2012 Apr 17.

8.

Genomic and proteomic analyses of Mycobacterium bovis BCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection.

Orduña P, Cevallos MA, de León SP, Arvizu A, Hernández-González IL, Mendoza-Hernández G, López-Vidal Y.

BMC Genomics. 2011 Oct 8;12:493. doi: 10.1186/1471-2164-12-493.

9.

Dysregulation of serine biosynthesis contributes to the growth defect of a Mycobacterium tuberculosis crp mutant.

Bai G, Schaak DD, Smith EA, McDonough KA.

Mol Microbiol. 2011 Oct;82(1):180-98. doi: 10.1111/j.1365-2958.2011.07806.x. Epub 2011 Sep 8.

10.

Cyclic AMP signalling in mycobacteria: redirecting the conversation with a common currency.

Bai G, Knapp GS, McDonough KA.

Cell Microbiol. 2011 Mar;13(3):349-58. doi: 10.1111/j.1462-5822.2010.01562.x. Epub 2010 Dec 28. Review.

11.

CREB is a positive transcriptional regulator of gamma interferon in latent but not active tuberculosis infections.

Liu Y, Guo YL, Zhou SJ, Liu F, Du FJ, Zheng XJ, Jia HY, Zhang ZD.

Clin Vaccine Immunol. 2010 Sep;17(9):1377-80. doi: 10.1128/CVI.00242-10. Epub 2010 Aug 4.

12.

Identification of trans- and cis-control elements involved in regulation of the carbon monoxide dehydrogenase genes in Mycobacterium sp. strain JC1 DSM 3803.

Oh JI, Park SJ, Shin SJ, Ko IJ, Han SJ, Park SW, Song T, Kim YM.

J Bacteriol. 2010 Aug;192(15):3925-33. doi: 10.1128/JB.00286-10. Epub 2010 May 28.

13.

Mycobacterium tuberculosis cAMP receptor protein (Rv3676) differs from the Escherichia coli paradigm in its cAMP binding and DNA binding properties and transcription activation properties.

Stapleton M, Haq I, Hunt DM, Arnvig KB, Artymiuk PJ, Buxton RS, Green J.

J Biol Chem. 2010 Mar 5;285(10):7016-27. doi: 10.1074/jbc.M109.047720. Epub 2009 Dec 22.

14.

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet.

Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J.

Nucleic Acids Res. 2009 Aug;37(14):e97. doi: 10.1093/nar/gkp453. Epub 2009 Jun 3.

15.

A comprehensive survey of single nucleotide polymorphisms (SNPs) across Mycobacterium bovis strains and M. bovis BCG vaccine strains refines the genealogy and defines a minimal set of SNPs that separate virulent M. bovis strains and M. bovis BCG strains.

Garcia Pelayo MC, Uplekar S, Keniry A, Mendoza Lopez P, Garnier T, Nunez Garcia J, Boschiroli L, Zhou X, Parkhill J, Smith N, Hewinson RG, Cole ST, Gordon SV.

Infect Immun. 2009 May;77(5):2230-8. doi: 10.1128/IAI.01099-08. Epub 2009 Mar 16.

16.

cAMP levels within Mycobacterium tuberculosis and Mycobacterium bovis BCG increase upon infection of macrophages.

Bai G, Schaak DD, McDonough KA.

FEMS Immunol Med Microbiol. 2009 Jan;55(1):68-73. doi: 10.1111/j.1574-695X.2008.00500.x. Epub 2008 Dec 6.

17.

Rv1675c (cmr) regulates intramacrophage and cyclic AMP-induced gene expression in Mycobacterium tuberculosis-complex mycobacteria.

Gazdik MA, Bai G, Wu Y, McDonough KA.

Mol Microbiol. 2009 Jan;71(2):434-48. doi: 10.1111/j.1365-2958.2008.06541.x. Epub 2008 Nov 14.

18.

Expression of the Mycobacterium tuberculosis acr-coregulated genes from the DevR (DosR) regulon is controlled by multiple levels of regulation.

Vasudeva-Rao HM, McDonough KA.

Infect Immun. 2008 Jun;76(6):2478-89. doi: 10.1128/IAI.01443-07. Epub 2008 Apr 7.

19.

Cyclic AMP in mycobacteria: characterization and functional role of the Rv1647 ortholog in Mycobacterium smegmatis.

Dass BK, Sharma R, Shenoy AR, Mattoo R, Visweswariah SS.

J Bacteriol. 2008 Jun;190(11):3824-34. doi: 10.1128/JB.00138-08. Epub 2008 Apr 4.

20.

Single nucleotide polymorphisms that cause structural changes in the cyclic AMP receptor protein transcriptional regulator of the tuberculosis vaccine strain Mycobacterium bovis BCG alter global gene expression without attenuating growth.

Hunt DM, Saldanha JW, Brennan JF, Benjamin P, Strom M, Cole JA, Spreadbury CL, Buxton RS.

Infect Immun. 2008 May;76(5):2227-34. doi: 10.1128/IAI.01410-07. Epub 2008 Mar 10.

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