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Items: 1 to 20 of 203

1.

Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster.

Combs PA, Eisen MB.

F1000Res. 2017 Jan 12;6:41. doi: 10.12688/f1000research.9720.1. eCollection 2017.

2.

Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos.

Desponds J, Tran H, Ferraro T, Lucas T, Perez Romero C, Guillou A, Fradin C, Coppey M, Dostatni N, Walczak AM.

PLoS Comput Biol. 2016 Dec 12;12(12):e1005256. doi: 10.1371/journal.pcbi.1005256. eCollection 2016 Dec.

3.

An integrated modelling framework from cells to organism based on a cohort of digital embryos.

Villoutreix P, Delile J, Rizzi B, Duloquin L, Savy T, Bourgine P, Doursat R, Peyriéras N.

Sci Rep. 2016 Dec 2;6:37438. doi: 10.1038/srep37438.

4.

Kinetics of transcription initiation directed by multiple cis-regulatory elements on the glnAp2 promoter.

Wang Y, Liu F, Wang W.

Nucleic Acids Res. 2016 Dec 15;44(22):10530-10538. Epub 2016 Nov 29.

5.

Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.

Hillenbrand P, Gerland U, Tkačik G.

PLoS One. 2016 Sep 27;11(9):e0163628. doi: 10.1371/journal.pone.0163628. eCollection 2016.

6.

Information Integration and Energy Expenditure in Gene Regulation.

Estrada J, Wong F, DePace A, Gunawardena J.

Cell. 2016 Jun 30;166(1):234-44. doi: 10.1016/j.cell.2016.06.012.

PMID:
27368104
7.

What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism.

Symmons O, Raj A.

Mol Cell. 2016 Jun 2;62(5):788-802. doi: 10.1016/j.molcel.2016.05.023. Review.

PMID:
27259209
8.

Scaling of morphogenetic patterns in reaction-diffusion systems.

Rasolonjanahary M, Vasiev B.

J Theor Biol. 2016 Sep 7;404:109-19. doi: 10.1016/j.jtbi.2016.05.035. Epub 2016 May 31.

9.

Predicting Ancestral Segmentation Phenotypes from Drosophila to Anopheles Using In Silico Evolution.

Rothschild JB, Tsimiklis P, Siggia ED, François P.

PLoS Genet. 2016 May 26;12(5):e1006052. doi: 10.1371/journal.pgen.1006052. eCollection 2016 May.

10.

Developmental mechanisms underlying variable, invariant and plastic phenotypes.

Abley K, Locke JC, Leyser HM.

Ann Bot. 2016 Apr;117(5):733-48. doi: 10.1093/aob/mcw016. Epub 2016 Apr 11. Review.

11.

Noise modulation in retinoic acid signaling sharpens segmental boundaries of gene expression in the embryonic zebrafish hindbrain.

Sosnik J, Zheng L, Rackauckas CV, Digman M, Gratton E, Nie Q, Schilling TF.

Elife. 2016 Apr 12;5:e14034. doi: 10.7554/eLife.14034.

12.
13.

Spatial landmarks regulate a Cdc42-dependent MAPK pathway to control differentiation and the response to positional compromise.

Basu S, Vadaie N, Prabhakar A, Li B, Adhikari H, Pitoniak A, Chow J, Chavel CA, Cullen PJ.

Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):E2019-28. doi: 10.1073/pnas.1522679113. Epub 2016 Mar 21.

14.

Measuring time during early embryonic development.

Ferree PL, Deneke VE, Di Talia S.

Semin Cell Dev Biol. 2016 Jul;55:80-8. doi: 10.1016/j.semcdb.2016.03.013. Epub 2016 Mar 16. Review.

PMID:
26994526
15.

Extending the dynamic range of transcription factor action by translational regulation.

Sokolowski TR, Walczak AM, Bialek W, Tkačik G.

Phys Rev E. 2016 Feb;93(2):022404. doi: 10.1103/PhysRevE.93.022404. Epub 2016 Feb 4.

16.

Fluctuations, Correlations and the Estimation of Concentrations inside Cells.

Pérez Ipiña E, Ponce Dawson S.

PLoS One. 2016 Mar 10;11(3):e0151132. doi: 10.1371/journal.pone.0151132. eCollection 2016.

17.

Know the Single-Receptor Sensing Limit? Think Again.

Aquino G, Wingreen NS, Endres RG.

J Stat Phys. 2016;162:1353-1364. Epub 2015 Nov 23.

18.

New methods to image transcription in living fly embryos: the insights so far, and the prospects.

Ferraro T, Lucas T, Clémot M, De Las Heras Chanes J, Desponds J, Coppey M, Walczak AM, Dostatni N.

Wiley Interdiscip Rev Dev Biol. 2016 May-Jun;5(3):296-310. doi: 10.1002/wdev.221. Epub 2016 Feb 19. Review.

19.

Gap Gene Regulatory Dynamics Evolve along a Genotype Network.

Crombach A, Wotton KR, Jiménez-Guri E, Jaeger J.

Mol Biol Evol. 2016 May;33(5):1293-307. doi: 10.1093/molbev/msw013. Epub 2016 Jan 21.

20.

Limits to the precision of gradient sensing with spatial communication and temporal integration.

Mugler A, Levchenko A, Nemenman I.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E689-95. doi: 10.1073/pnas.1509597112. Epub 2016 Jan 20.

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