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Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate.

Furmanczyk EM, Kaminski MA, Spolnik G, Sojka M, Danikiewicz W, Dziembowski A, Lipinski L, Sobczak A.

Front Microbiol. 2017 Nov 7;8:1872. doi: 10.3389/fmicb.2017.01872. eCollection 2017.


Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia.

Ben Said S, Or D.

Front Microbiol. 2017 Jun 16;8:1125. doi: 10.3389/fmicb.2017.01125. eCollection 2017.


Characterization of a Unique Pathway for 4-Cresol Catabolism Initiated by Phosphorylation in Corynebacterium glutamicum.

Du L, Ma L, Qi F, Zheng X, Jiang C, Li A, Wan X, Liu SJ, Li S.

J Biol Chem. 2016 Mar 18;291(12):6583-94. doi: 10.1074/jbc.M115.695320. Epub 2016 Jan 27.


Fecal metabolomics: assay performance and association with colorectal cancer.

Goedert JJ, Sampson JN, Moore SC, Xiao Q, Xiong X, Hayes RB, Ahn J, Shi J, Sinha R.

Carcinogenesis. 2014 Sep;35(9):2089-96. doi: 10.1093/carcin/bgu131. Epub 2014 Jul 18.


The bamA gene for anaerobic ring fission is widely distributed in the environment.

Porter AW, Young LY.

Front Microbiol. 2013 Oct 10;4:302. doi: 10.3389/fmicb.2013.00302. Review.


Anaerobic benzene oxidation via phenol in Geobacter metallireducens.

Zhang T, Tremblay PL, Chaurasia AK, Smith JA, Bain TS, Lovley DR.

Appl Environ Microbiol. 2013 Dec;79(24):7800-6. doi: 10.1128/AEM.03134-13. Epub 2013 Oct 4.


Anaerobic benzene oxidation by Geobacter species.

Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.

Appl Environ Microbiol. 2012 Dec;78(23):8304-10. doi: 10.1128/AEM.02469-12. Epub 2012 Sep 21.


Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens.

Oberender J, Kung JW, Seifert J, von Bergen M, Boll M.

J Bacteriol. 2012 May;194(10):2501-8. doi: 10.1128/JB.00306-12. Epub 2012 Mar 9.


Identification of a transcriptional repressor involved in benzoate metabolism in Geobacter bemidjiensis.

Ueki T.

Appl Environ Microbiol. 2011 Oct;77(19):7058-62. doi: 10.1128/AEM.05516-11. Epub 2011 Aug 5.


Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.

Holmes DE, Risso C, Smith JA, Lovley DR.

ISME J. 2012 Jan;6(1):146-57. doi: 10.1038/ismej.2011.88. Epub 2011 Jul 21.


Monitoring the metabolic status of geobacter species in contaminated groundwater by quantifying key metabolic proteins with Geobacter-specific antibodies.

Yun J, Ueki T, Miletto M, Lovley DR.

Appl Environ Microbiol. 2011 Jul;77(13):4597-602. doi: 10.1128/AEM.00114-11. Epub 2011 May 6.


Novel regulator MphX represses activation of phenol hydroxylase genes caused by a XylR/DmpR-type regulator MphR in Acinetobacter calcoaceticus.

Yu H, Peng Z, Zhan Y, Wang J, Yan Y, Chen M, Lu W, Ping S, Zhang W, Zhao Z, Li S, Takeo M, Lin M.

PLoS One. 2011 Mar 24;6(3):e17350. doi: 10.1371/journal.pone.0017350.


Constraint-based modeling analysis of the metabolism of two Pelobacter species.

Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.

BMC Syst Biol. 2010 Dec 23;4:174. doi: 10.1186/1752-0509-4-174.


Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene.

DiDonato RJ Jr, Young ND, Butler JE, Chin KJ, Hixson KK, Mouser P, Lipton MS, DeBoy R, Methé BA.

PLoS One. 2010 Nov 19;5(11):e14072. doi: 10.1371/journal.pone.0014072.


The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.

BMC Genomics. 2010 Sep 9;11:490. doi: 10.1186/1471-2164-11-490.


Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.

Lykidis A, Chen CL, Tringe SG, McHardy AC, Copeland A, Kyrpides NC, Hugenholtz P, Macarie H, Olmos A, Monroy O, Liu WT.

ISME J. 2011 Jan;5(1):122-30. doi: 10.1038/ismej.2010.125. Epub 2010 Aug 5.


Genome-wide investigation and functional characterization of the beta-ketoadipate pathway in the nitrogen-fixing and root-associated bacterium Pseudomonas stutzeri A1501.

Li D, Yan Y, Ping S, Chen M, Zhang W, Li L, Lin W, Geng L, Liu W, Lu W, Lin M.

BMC Microbiol. 2010 Feb 8;10:36. doi: 10.1186/1471-2180-10-36.


Identification of the Geobacter metallireducens bamVW two-component system, involved in transcriptional regulation of aromatic degradation.

Juárez JF, Zamarro MT, Barragán MJ, Blázquez B, Boll M, Kuntze K, García JL, Díaz E, Carmona M.

Appl Environ Microbiol. 2010 Jan;76(1):383-5. doi: 10.1128/AEM.02255-09. Epub 2009 Nov 13.


Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.

Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU.

J Bacteriol. 2010 Jan;192(1):295-306. doi: 10.1128/JB.00874-09.


Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases.

Kung JW, Löffler C, Dörner K, Heintz D, Gallien S, Van Dorsselaer A, Friedrich T, Boll M.

Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17687-92. doi: 10.1073/pnas.0905073106. Epub 2009 Oct 6.

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