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Items: 1 to 20 of 161


Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.

Acuña-Amador L, Primot A, Cadieu E, Roulet A, Barloy-Hubler F.

BMC Genomics. 2018 Jan 16;19(1):54. doi: 10.1186/s12864-017-4429-4.


Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Göker M, Goodfellow M.

Sci Rep. 2018 Jan 11;8(1):525. doi: 10.1038/s41598-017-17392-0.


Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.

Kiu R, Caim S, Alexander S, Pachori P, Hall LJ.

Front Microbiol. 2017 Dec 12;8:2485. doi: 10.3389/fmicb.2017.02485. eCollection 2017.


Genome of Russian wheat aphid an economically important cereal aphid.

Burger NFV, Botha AM.

Stand Genomic Sci. 2017 Dec 28;12:90. doi: 10.1186/s40793-017-0307-6. eCollection 2017.


Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field.

Birkeland NK, Schönheit P, Poghosyan L, Fiebig A, Klenk HP.

Stand Genomic Sci. 2017 Dec 16;12:79. doi: 10.1186/s40793-017-0296-5. eCollection 2017.


High-quality draft genome sequence of Effusibacillus lacus strain skLN1T, facultative anaerobic spore-former isolated from freshwater lake sediment.

Watanabe M, Tokizawa R, Kojima H, Fukui M.

Stand Genomic Sci. 2017 Dec 13;12:76. doi: 10.1186/s40793-017-0302-y. eCollection 2017.


CRISPR-Cas Systems in Bacteroides fragilis, an Important Pathobiont in the Human Gut Microbiome.

Tajkarimi M, Wexler HM.

Front Microbiol. 2017 Nov 23;8:2234. doi: 10.3389/fmicb.2017.02234. eCollection 2017.


Draft genome sequence of Venturia carpophila, the causal agent of peach scab.

Chen C, Bock CH, Wood BW.

Stand Genomic Sci. 2017 Dec 2;12:68. doi: 10.1186/s40793-017-0280-0. eCollection 2017.


Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J.

Stand Genomic Sci. 2017 Nov 15;12:67. doi: 10.1186/s40793-017-0279-6. eCollection 2017.


Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy.

Zablocki O, van Zyl LJ, Kirby B, Trindade M.

Viruses. 2017 Nov 18;9(11). pii: E348. doi: 10.3390/v9110348. Erratum in: Viruses. 2018 Jan 02;10 (1):.


Complete Genome Sequence of a Psychrotolerant Denitrifying Bacterium, Janthinobacterium svalbardensis PAMC 27463.

Cho YJ, Jung YJ, Hong SG, Kim OS.

Genome Announc. 2017 Nov 16;5(46). pii: e01178-17. doi: 10.1128/genomeA.01178-17.


First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.

Muller EEL, Narayanasamy S, Zeimes M, Laczny CC, Lebrun LA, Herold M, Hicks ND, Gillece JD, Schupp JM, Keim P, Wilmes P.

Stand Genomic Sci. 2017 Oct 18;12:64. doi: 10.1186/s40793-017-0274-y. eCollection 2017.


Complete Genome Sequence of Mesorhizobium sophorae ICMP 19535T, a Highly Specific, Nitrogen-Fixing Symbiont of New Zealand Endemic Sophora spp.

De Meyer SE, Nguyen DT, Wang P, Andrews M.

Genome Announc. 2017 Oct 26;5(43). pii: e00958-17. doi: 10.1128/genomeA.00958-17.


Pathogenicity of Human ST23 Streptococcus agalactiae to Fish and Genomic Comparison of Pathogenic and Non-pathogenic Isolates.

Wang R, Li L, Huang Y, Huang T, Tang J, Xie T, Lei A, Luo F, Li J, Huang Y, Shi Y, Wang D, Chen M, Mi Q, Huang W.

Front Microbiol. 2017 Oct 6;8:1933. doi: 10.3389/fmicb.2017.01933. eCollection 2017. Erratum in: Front Microbiol. 2018 Feb 06;9:173.


Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum.

Hidalgo-Cantabrana C, Crawley AB, Sanchez B, Barrangou R.

Front Microbiol. 2017 Sep 26;8:1851. doi: 10.3389/fmicb.2017.01851. eCollection 2017.


The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides.

Benítez-Páez A, Gómez Del Pulgar EM, Sanz Y.

Front Cell Infect Microbiol. 2017 Aug 25;7:383. doi: 10.3389/fcimb.2017.00383. eCollection 2017.


The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen.

Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP.

Genome Biol Evol. 2017 Sep 1;9(9):2292-2307. doi: 10.1093/gbe/evx162.


Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

Gerritsen J, Hornung B, Renckens B, van Hijum SAFT, Martins Dos Santos VAP, Rijkers GT, Schaap PJ, de Vos WM, Smidt H.

PeerJ. 2017 Sep 11;5:e3698. doi: 10.7717/peerj.3698. eCollection 2017.


MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes.

Moller AG, Liang C.

PeerJ. 2017 Sep 7;5:e3788. doi: 10.7717/peerj.3788. eCollection 2017.


Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species.

Watanabe T, Shibasaki M, Maruyama F, Sekizaki T, Nakagawa I.

PLoS One. 2017 Aug 24;12(8):e0183752. doi: 10.1371/journal.pone.0183752. eCollection 2017.

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