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Abnormal Elongations of HOX Gene Clusters May Cause Cancer.

Papageorgiou S.

Front Cell Dev Biol. 2018 Mar 12;6:25. doi: 10.3389/fcell.2018.00025. eCollection 2018. No abstract available.


Integrated DNA methylation analysis identifies topographical and tumoral biomarkers in pilocytic astrocytomas.

Antonelli M, Fadda A, Loi E, Moi L, Zavattari C, Sulas P, Gentilini D, Cameli C, Bacchelli E, Badiali M, Arcella A, Morra I, Giangaspero F, Zavattari P.

Oncotarget. 2018 Feb 12;9(17):13807-13821. doi: 10.18632/oncotarget.24480. eCollection 2018 Mar 2.


High level of homeobox A9 and PBX homeobox 3 expression in gastric cancer correlates with poor prognosis.

Ma YY, Zhang Y, Mou XZ, Liu ZC, Ru GQ, Li E.

Oncol Lett. 2017 Nov;14(5):5883-5889. doi: 10.3892/ol.2017.6937. Epub 2017 Sep 14.


Epigenomic study identifies a novel mesenchyme homeobox2-GLI1 transcription axis involved in cancer drug resistance, overall survival and therapy prognosis in lung cancer patients.

Armas-López L, Piña-Sánchez P, Arrieta O, de Alba EG, Ortiz-Quintero B, Santillán-Doherty P, Christiani DC, Zúñiga J, Ávila-Moreno F.

Oncotarget. 2017 May 9;8(40):67056-67081. doi: 10.18632/oncotarget.17715. eCollection 2017 Sep 15.


Genome-wide DNA methylation profiling reveals cancer-associated changes within early colonic neoplasia.

Hanley MP, Hahn MA, Li AX, Wu X, Lin J, Wang J, Choi AH, Ouyang Z, Fong Y, Pfeifer GP, Devers TJ, Rosenberg DW.

Oncogene. 2017 Aug 31;36(35):5035-5044. doi: 10.1038/onc.2017.130. Epub 2017 May 1.


Epigenetic inactivation of HOXA11, a novel functional tumor suppressor for renal cell carcinoma, is associated with RCC TNM classification.

Wang L, Cui Y, Sheng J, Yang Y, Kuang G, Fan Y, Jin J, Zhang Q.

Oncotarget. 2017 Mar 28;8(13):21861-21870. doi: 10.18632/oncotarget.15668.


Intragenic CpG islands play important roles in bivalent chromatin assembly of developmental genes.

Lee SM, Lee J, Noh KM, Choi WY, Jeon S, Oh GT, Kim-Ha J, Jin Y, Cho SW, Kim YJ.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E1885-E1894. doi: 10.1073/pnas.1613300114. Epub 2017 Feb 21.


Mutual regulation of microRNAs and DNA methylation in human cancers.

Wang S, Wu W, Claret FX.

Epigenetics. 2017 Mar 4;12(3):187-197. doi: 10.1080/15592294.2016.1273308. Epub 2017 Jan 6. Review.


Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study.

Jiang CL, He SW, Zhang YD, Duan HX, Huang T, Huang YC, Li GF, Wang P, Ma LJ, Zhou GB, Cao Y.

Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.


Identification and validation of candidate epigenetic biomarkers in lung adenocarcinoma.

Daugaard I, Dominguez D, Kjeldsen TE, Kristensen LS, Hager H, Wojdacz TK, Hansen LL.

Sci Rep. 2016 Oct 26;6:35807. doi: 10.1038/srep35807.


Impact of homeobox genes in gastrointestinal cancer.

Joo MK, Park JJ, Chun HJ.

World J Gastroenterol. 2016 Oct 7;22(37):8247-8256. Review.


An Epigenomic Approach to Improving Response to Neoadjuvant Cisplatin Chemotherapy in Bladder Cancer.

Xylinas E, Hassler MR, Zhuang D, Krzywinski M, Erdem Z, Robinson BD, Elemento O, Clozel T, Shariat SF.

Biomolecules. 2016 Sep 2;6(3). pii: E37. doi: 10.3390/biom6030037.


Genome-wide DNA methylation analyses in lung adenocarcinomas: Association with EGFR, KRAS and TP53 mutation status, gene expression and prognosis.

Bjaanæs MM, Fleischer T, Halvorsen AR, Daunay A, Busato F, Solberg S, Jørgensen L, Kure E, Edvardsen H, Børresen-Dale AL, Brustugun OT, Tost J, Kristensen V, Helland Å.

Mol Oncol. 2016 Feb;10(2):330-43. doi: 10.1016/j.molonc.2015.10.021. Epub 2015 Nov 6.


The DNA methylation landscape of human melanoma.

Jin SG, Xiong W, Wu X, Yang L, Pfeifer GP.

Genomics. 2015 Dec;106(6):322-30. doi: 10.1016/j.ygeno.2015.09.004. Epub 2015 Sep 15.


The homeoprotein DLX4 stimulates NF-κB activation and CD44-mediated tumor-mesothelial cell interactions in ovarian cancer.

Haria D, Trinh BQ, Ko SY, Barengo N, Liu J, Naora H.

Am J Pathol. 2015 Aug;185(8):2298-308. doi: 10.1016/j.ajpath.2015.04.004. Epub 2015 Jun 9.


Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging.

Jung M, Jin SG, Zhang X, Xiong W, Gogoshin G, Rodin AS, Pfeifer GP.

Nucleic Acids Res. 2015 Sep 3;43(15):e100. doi: 10.1093/nar/gkv473. Epub 2015 May 14.


MIRA-seq for DNA methylation analysis of CpG islands.

Jung M, Kadam S, Xiong W, Rauch TA, Jin SG, Pfeifer GP.

Epigenomics. 2015 Aug;7(5):695-706. doi: 10.2217/epi.15.33. Epub 2015 Apr 17.


Genome-wide DNA methylation analysis reveals estrogen-mediated epigenetic repression of metallothionein-1 gene cluster in breast cancer.

Jadhav RR, Ye Z, Huang RL, Liu J, Hsu PY, Huang YW, Rangel LB, Lai HC, Roa JC, Kirma NB, Huang TH, Jin VX.

Clin Epigenetics. 2015 Feb 24;7:13. doi: 10.1186/s13148-015-0045-9. eCollection 2015.


DNA methylation and RNA expression profiles in lung adenocarcinomas of never-smokers.

Mansfield AS, Wang L, Cunningham JM, Jen J, Kolbert CP, Sun Z, Yang P.

Cancer Genet. 2015 May;208(5):253-60. doi: 10.1016/j.cancergen.2014.12.002. Epub 2014 Dec 31.


Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems.

Nestor CE, Ottaviano R, Reinhardt D, Cruickshanks HA, Mjoseng HK, McPherson RC, Lentini A, Thomson JP, Dunican DS, Pennings S, Anderton SM, Benson M, Meehan RR.

Genome Biol. 2015 Feb 4;16:11. doi: 10.1186/s13059-014-0576-y.

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