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Items: 18

1.

Determining the Mitochondrial Methyl Proteome in Saccharomyces cerevisiae using Heavy Methyl SILAC.

Caslavka Zempel KE, Vashisht AA, Barshop WD, Wohlschlegel JA, Clarke SG.

J Proteome Res. 2016 Dec 2;15(12):4436-4451.

PMID:
27696855
2.

Protein and DNA modifications: evolutionary imprints of bacterial biochemical diversification and geochemistry on the provenance of eukaryotic epigenetics.

Aravind L, Burroughs AM, Zhang D, Iyer LM.

Cold Spring Harb Perspect Biol. 2014 Jul 1;6(7):a016063. doi: 10.1101/cshperspect.a016063. Review.

3.

The functional diversity of protein lysine methylation.

Lanouette S, Mongeon V, Figeys D, Couture JF.

Mol Syst Biol. 2014 Apr 8;10:724. doi: 10.1002/msb.134974. Review.

4.

An unexpected journey: lysine methylation across the proteome.

Moore KE, Gozani O.

Biochim Biophys Acta. 2014 Dec;1839(12):1395-403. doi: 10.1016/j.bbagrm.2014.02.008. Review.

5.

Methylation of yeast ribosomal protein S2 is elevated during stationary phase growth conditions.

Ladror DT, Frey BL, Scalf M, Levenstein ME, Artymiuk JM, Smith LM.

Biochem Biophys Res Commun. 2014 Mar 14;445(3):535-41. doi: 10.1016/j.bbrc.2014.01.040.

6.

SET for life: biochemical activities and biological functions of SET domain-containing proteins.

Herz HM, Garruss A, Shilatifard A.

Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Review. No abstract available.

7.

Identification of functional modules of AKMT, a novel lysine methyltransferase regulating the motility of Toxoplasma gondii.

Sivagurunathan S, Heaslip A, Liu J, Hu K.

Mol Biochem Parasitol. 2013 May;189(1-2):43-53. doi: 10.1016/j.molbiopara.2013.05.004.

8.

Protein methylation at the surface and buried deep: thinking outside the histone box.

Clarke SG.

Trends Biochem Sci. 2013 May;38(5):243-52. doi: 10.1016/j.tibs.2013.02.004. Review.

9.

New partners in regulation of gene expression: the enhancer of Trithorax and Polycomb Corto interacts with methylated ribosomal protein l12 via its chromodomain.

Coléno-Costes A, Jang SM, de Vanssay A, Rougeot J, Bouceba T, Randsholt NB, Gibert JM, Le Crom S, Mouchel-Vielh E, Bloyer S, Peronnet F.

PLoS Genet. 2012;8(10):e1003006. doi: 10.1371/journal.pgen.1003006.

10.

The role of a newly identified SET domain-containing protein, SETD3, in oncogenesis.

Chen Z, Yan CT, Dou Y, Viboolsittiseri SS, Wang JH.

Haematologica. 2013 May;98(5):739-43. doi: 10.3324/haematol.2012.066977.

11.

Substrate and product specificities of SET domain methyltransferases.

Del Rizzo PA, Trievel RC.

Epigenetics. 2011 Sep 1;6(9):1059-67. doi: 10.4161/epi.6.9.16069. Review.

12.

The ribosomal l1 protuberance in yeast is methylated on a lysine residue catalyzed by a seven-beta-strand methyltransferase.

Webb KJ, Al-Hadid Q, Zurita-Lopez CI, Young BD, Lipson RS, Clarke SG.

J Biol Chem. 2011 May 27;286(21):18405-13. doi: 10.1074/jbc.M110.200410.

13.

A novel 3-methylhistidine modification of yeast ribosomal protein Rpl3 is dependent upon the YIL110W methyltransferase.

Webb KJ, Zurita-Lopez CI, Al-Hadid Q, Laganowsky A, Young BD, Lipson RS, Souda P, Faull KF, Whitelegge JP, Clarke SG.

J Biol Chem. 2010 Nov 26;285(48):37598-606. doi: 10.1074/jbc.M110.170787.

14.

Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications.

Pang CN, Gasteiger E, Wilkins MR.

BMC Genomics. 2010 Feb 5;11:92. doi: 10.1186/1471-2164-11-92.

15.

A methyltransferase-independent function for Rmt3 in ribosomal subunit homeostasis.

Perreault A, Gascon S, D'Amours A, Aletta JM, Bachand F.

J Biol Chem. 2009 May 29;284(22):15026-37. doi: 10.1074/jbc.M109.004812.

16.

Computational identification of protein methylation sites through bi-profile Bayes feature extraction.

Shao J, Xu D, Tsai SN, Wang Y, Ngai SM.

PLoS One. 2009;4(3):e4920. doi: 10.1371/journal.pone.0004920.

17.

Rubisco in complex with Rubisco large subunit methyltransferase.

Raunser S, Magnani R, Huang Z, Houtz RL, Trievel RC, Penczek PA, Walz T.

Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3160-5. doi: 10.1073/pnas.0810563106.

18.

Identification of two SET domain proteins required for methylation of lysine residues in yeast ribosomal protein Rpl42ab.

Webb KJ, Laganowsky A, Whitelegge JP, Clarke SG.

J Biol Chem. 2008 Dec 19;283(51):35561-8. doi: 10.1074/jbc.M806006200.

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